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The map label for this gene is gcdB [H]

Identifier: 29347106

GI number: 29347106

Start: 2094462

End: 2095697

Strand: Reverse

Name: gcdB [H]

Synonym: BT_1696

Alternate gene names: 29347106

Gene position: 2095697-2094462 (Counterclockwise)

Preceding gene: 29347107

Following gene: 29347101

Centisome position: 33.48

GC content: 46.6

Gene sequence:

>1236_bases
ATGAACGAGATATTTGAGAACTTATATGACATGACTGCGTTCAGCAATATCATTGCCGAACCGCAGTTTCTGATAATGTA
TGCCATCGCGTTCGTCCTGCTTTATCTGGGGATTAAGAAACAGTACGAACCGCTGCTGCTTGTTCCGATTGCTTTCGGTG
TGTTGCTTGCCAACTTCCCCGGAGGAGATATGGGAGTGATACAGGCAGACGAGAATGGTATGGTGATGATAAACGGTGTG
ATGAAGAATATCTGGGAAATGCCTTTGCATGACATTGCGCATGAACTGGGAATTATGAACTTCATCTATTATATGCTGAT
CAAGACCGGTTTCCTGCCTCCGATCATCTTTATGGGGGTCGGTGCGTTGACGGACTTCGGACCGATGTTGCGTAATCTGC
ATCTTTCCATCTTTGGAGCTGCTGCACAGTTAGGTATCTTTACTGTTCTGCTGGTAGCCATCCTGATGGGATTCACTCCG
CAAGAAGCTGCTTCACTGGGTATTATCGGTGGTGCGGACGGACCGACAGCCATCTTTACAACGATCAAGCTGGCTCCGCA
TTTGCTGGGTCCGATCGCTATTGCCGCTTATTCTTATATGGCACTGGTGCCTGTGATCATTCCGTTGGTAGTGAAGCTGT
TCTGTACTAAGAAAGAACTGAGCATCAACATGAAGGAACAGGAAAAGAAATATCCTTCGAAGACGGAAATCAAGAATCTG
CGTGTACTGAAGATTATTTTCCCGATTGTAGTGACTACGATTGTAGCTCTCTTCGTCCCAAGTGCAGTACCTTTGATCGG
TATGCTGATGTTCGGTAATCTGGTGAAAGAAATCGGAAGCAATACTTTCCGTCTGTTCGACGCTGCTTCCAACAGTATCA
TGAATGCTGCTACTATCTTCCTCGGACTTTCGGTAGGTGCAACCATGACGGCTGAAGCCTTCTTGAACTGGACGACAATC
GGTATTGTCATCGGTGGTTTCCTTGCATTTGCTCTTTCTATTACCGGTGGTATCTTCTTTGTGAAGTTAGTGAATCTATT
CTCCAAGAAGAAGATTAATCCGCTGATCGGAGCGACCGGACTGAGCGCTGTTCCGATGGCAAGCCGTGTGGCGAATGAGA
TTGCGTTGAAATACGATCCGAAGAATCATGTATTGCAGTATTGTATGGCAAGTAACATCTCAGGGGTAATCGGCTCGGCA
GTAGCTGCGGGTGTACTGATCTCCTTCCTTGCATAA

Upstream 100 bases:

>100_bases
ACAACGCTATCCGTGCCGAATTTAGCGGTACGATAACTGCTATCTGCGCTAATCCGGGAGACACTGTTTCAGAAGATGAT
GTATTAATGAAGATAGGATA

Downstream 100 bases:

>100_bases
TAAAAAGAACAACCAATAAAAATTAGGCACGGATTACGCGGATAAACACGGTTTTTAGTTACTCAACTCTTAAAACCGTG
AAATCCGTGTCATCCGTGCC

Product: oxaloacetate decarboxylase beta chain

Products: NA

Alternate protein names: Carboxylyase [H]

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MNEIFENLYDMTAFSNIIAEPQFLIMYAIAFVLLYLGIKKQYEPLLLVPIAFGVLLANFPGGDMGVIQADENGMVMINGV
MKNIWEMPLHDIAHELGIMNFIYYMLIKTGFLPPIIFMGVGALTDFGPMLRNLHLSIFGAAAQLGIFTVLLVAILMGFTP
QEAASLGIIGGADGPTAIFTTIKLAPHLLGPIAIAAYSYMALVPVIIPLVVKLFCTKKELSINMKEQEKKYPSKTEIKNL
RVLKIIFPIVVTTIVALFVPSAVPLIGMLMFGNLVKEIGSNTFRLFDAASNSIMNAATIFLGLSVGATMTAEAFLNWTTI
GIVIGGFLAFALSITGGIFFVKLVNLFSKKKINPLIGATGLSAVPMASRVANEIALKYDPKNHVLQYCMASNISGVIGSA
VAAGVLISFLA

Sequences:

>Translated_411_residues
MNEIFENLYDMTAFSNIIAEPQFLIMYAIAFVLLYLGIKKQYEPLLLVPIAFGVLLANFPGGDMGVIQADENGMVMINGV
MKNIWEMPLHDIAHELGIMNFIYYMLIKTGFLPPIIFMGVGALTDFGPMLRNLHLSIFGAAAQLGIFTVLLVAILMGFTP
QEAASLGIIGGADGPTAIFTTIKLAPHLLGPIAIAAYSYMALVPVIIPLVVKLFCTKKELSINMKEQEKKYPSKTEIKNL
RVLKIIFPIVVTTIVALFVPSAVPLIGMLMFGNLVKEIGSNTFRLFDAASNSIMNAATIFLGLSVGATMTAEAFLNWTTI
GIVIGGFLAFALSITGGIFFVKLVNLFSKKKINPLIGATGLSAVPMASRVANEIALKYDPKNHVLQYCMASNISGVIGSA
VAAGVLISFLA
>Mature_411_residues
MNEIFENLYDMTAFSNIIAEPQFLIMYAIAFVLLYLGIKKQYEPLLLVPIAFGVLLANFPGGDMGVIQADENGMVMINGV
MKNIWEMPLHDIAHELGIMNFIYYMLIKTGFLPPIIFMGVGALTDFGPMLRNLHLSIFGAAAQLGIFTVLLVAILMGFTP
QEAASLGIIGGADGPTAIFTTIKLAPHLLGPIAIAAYSYMALVPVIIPLVVKLFCTKKELSINMKEQEKKYPSKTEIKNL
RVLKIIFPIVVTTIVALFVPSAVPLIGMLMFGNLVKEIGSNTFRLFDAASNSIMNAATIFLGLSVGATMTAEAFLNWTTI
GIVIGGFLAFALSITGGIFFVKLVNLFSKKKINPLIGATGLSAVPMASRVANEIALKYDPKNHVLQYCMASNISGVIGSA
VAAGVLISFLA

Specific function: Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD) [H]

COG id: COG1883

COG function: function code C; Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gcdB/mmdB/oadB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005661 [H]

Pfam domain/function: PF03977 OAD_beta [H]

EC number: =4.1.1.70 [H]

Molecular weight: Translated: 44254; Mature: 44254

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEIFENLYDMTAFSNIIAEPQFLIMYAIAFVLLYLGIKKQYEPLLLVPIAFGVLLANFP
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCC
GGDMGVIQADENGMVMINGVMKNIWEMPLHDIAHELGIMNFIYYMLIKTGFLPPIIFMGV
CCCEEEEEECCCCEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
GALTDFGPMLRNLHLSIFGAAAQLGIFTVLLVAILMGFTPQEAASLGIIGGADGPTAIFT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCEEEEECCCCCHHHHH
TIKLAPHLLGPIAIAAYSYMALVPVIIPLVVKLFCTKKELSINMKEQEKKYPSKTEIKNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCHHHHHCCCCHHHHHHH
RVLKIIFPIVVTTIVALFVPSAVPLIGMLMFGNLVKEIGSNTFRLFDAASNSIMNAATIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCHHHHHHHHH
LGLSVGATMTAEAFLNWTTIGIVIGGFLAFALSITGGIFFVKLVNLFSKKKINPLIGATG
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCC
LSAVPMASRVANEIALKYDPKNHVLQYCMASNISGVIGSAVAAGVLISFLA
CCHHHHHHHHHHHHEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MNEIFENLYDMTAFSNIIAEPQFLIMYAIAFVLLYLGIKKQYEPLLLVPIAFGVLLANFP
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCC
GGDMGVIQADENGMVMINGVMKNIWEMPLHDIAHELGIMNFIYYMLIKTGFLPPIIFMGV
CCCEEEEEECCCCEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
GALTDFGPMLRNLHLSIFGAAAQLGIFTVLLVAILMGFTPQEAASLGIIGGADGPTAIFT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCEEEEECCCCCHHHHH
TIKLAPHLLGPIAIAAYSYMALVPVIIPLVVKLFCTKKELSINMKEQEKKYPSKTEIKNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCHHHHHCCCCHHHHHHH
RVLKIIFPIVVTTIVALFVPSAVPLIGMLMFGNLVKEIGSNTFRLFDAASNSIMNAATIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCHHHHHHHHH
LGLSVGATMTAEAFLNWTTIGIVIGGFLAFALSITGGIFFVKLVNLFSKKKINPLIGATG
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCC
LSAVPMASRVANEIALKYDPKNHVLQYCMASNISGVIGSAVAAGVLISFLA
CCHHHHHHHHHHHHEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10027965 [H]