| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is kpsD [H]
Identifier: 29347064
GI number: 29347064
Start: 2044605
End: 2046974
Strand: Reverse
Name: kpsD [H]
Synonym: BT_1654
Alternate gene names: 29347064
Gene position: 2046974-2044605 (Counterclockwise)
Preceding gene: 29347065
Following gene: 29347063
Centisome position: 32.7
GC content: 46.5
Gene sequence:
>2370_bases ATGCTGGGAAGTGGCTCGCTTATGGCTCAGTCCATGAGTGATTCACAAGTACTGGAATATGTAAAGGACGGTATCCGCCA AGGCAAGGAACAGAAGCAGCTTGCTTCCGAACTAGCCCGTAAGGGGGTAACCAAAGAACAGGCAATGCGTGTGAAGCAGC TATACGAGCAGCAGAACAATGTAAACACCTCGAAATCAACGGGCACGGACATCAACGAATCCCGCCTTCGTGAAGAGACT AAGGAGAATACTTCTGATATGCTGGAGGATCATCCGACTACTCAGGACCTTGCCCGTGGCGATCAGGTCTTCGGGCGCAA CATCTTCAATACCCGTAACCTGACATTTGAACCCAGTGTTAATCTGGCCACTCCTACCAATTACCGTCTTGGTCCCGGTG ATGAAGTCATCATTGATATCTGGGGTGCGAGCCAGAACACGATCCGCCAGCAAATCTCTCCTGAAGGTACTATCAACATT CAGAAGATCGGCCCTGTCAACCTTAGCGGTATGACAGTCTCTGCCGCCAATGACTATCTGAAGAACGCCCTGAATAAAAT ATATAACGGTCTGAACAACACGACCGATCCAACTTCCGACATCCGTCTGACTTTAGGTAATATCCGTACTATCCAGATCA ATGTGATGGGAGAAGTCGTGCAGCCGGGTACCTACGCCCTTTCTTCCTTCTCTACCGTCTTCCATGCGCTTTACCGTGCA GGCGGTGTGAGTGATATCGGCAGCCTCCGAAACGTTCAATTAGTACGCAACGGAAAGAATATCGCCACCATCGACGTCTA CGAATTTATCATGAAAGGCAACACACAGGATGACATCCGCCTTCAGGAAGGTGACGTCGTGATTGTTCCCGCTTATGATG TATTGGTAAAGATCAGCGGCAAGGTAAAACGTCCTATGCGTTTTGAAATGAAGAAAGAAGAGAACCTTGCCACTTTAATC AAATATGCCGGCGGCTTTGAAGCCGATGCCTACACCCGTTCATTACGTGTCGTCCGTCAGAATGGTGAGGAATACGAAGT CAACACAGTCAAAGATATAGATTACAGCATTTATAAAATGCGTAACGGCGATGTTGTAACAGCCGAAGCCATCCTTAACC GCTTCACAAACAAACTGGAAATCCGTGGTGCAGTTTACCGCCCCGGCATCTACCAGCTCAGCGGTAAATTGAATACGATC CGCGAACTGGTCAATGAAGCTCAGGGGCTGACCGGTGACGCTTTTCTGAATCGTGCTGTCCTCTATCGCCAGCGTGAGGA CCTGACCAGTGAAGTTGTTCAAATAGACATCAGGTCTATCATGGACGGCACTTCGCCGAACCTTGCCCTAATGAAGAATG ACATCCTCTACATCCCAAGTATCCACGACCTGGAAGATCGTGGCAATGTCACAGTTCACGGTGAGGTTGCCCAACCGGAT TCCTATCCTTATGCTGATAACATGACACTTGAGGATCTGATCATCCAGGCCGGTGGCTTGAAAGAAGCCGCCTCTACTGT TCGCATTGATGTATCAAGACGAATCAAGAATCCTCGTAGTACTGCGGATAATGATACGATCGGTCAGATGTATACCTTCT CTTTAAAGGATGGTTTTGTCATTGACGGTCAGCCCGGTTTTATCCTTCAGCCTTATGATGAAGTTTATGTCCGTCGTAGT CCTGGCTATCAGGCACAACAGAATGTAGCCATTGAAGGTGAAATCCTTTTCGGAGGAAATTACGCCATGACCAGCCGTGA GGAACGTCTTTCCGATTTGGTGAATAAAGCCGGTGGTCCGACCAATTATGCCTATCTGCGTGGTGCAAAACTGACCCGTG TGGCTAACGCTAGTGAGAAGAAACGTATGGGTGATGTAATTCGCCTTATGAGCAGGCAATTGGGCGAGGCCATGATTGAC TCTTTGGGTATTCGTGTCGAAGATACCTTTACGGTTGGAATTGATTTGGAAAAAGCCTTGAGCAATCCTAAAAGTAATGC CGATCTTGTCTTACGTGAAGGAGATGTGATCTCCATACCTAATAATAATAATACCGTAACTATCAATGGTGCTGTCATGG TTCCGAATACGGTTTCTTATATGCAGGGCAAGGATGTAGACTACTATTTGAATCAAGCCGGTGGTTATTCTGATAATGCG AAGAAGAGTAAGAAGTTCATAGTATATATGAATGGTCAGGTAACGAAGGTTAAGGGTAGCGGCAAGAAACAGATTGAACC GGGCTGTGAGATTATTGTGCCTAGTAAAGCTAAGAAGAAGGCTAATATTGGTAATATTTTGGGTTATGCTACTACGTTTA GTACATTGGGAATGATGGTTGCTTCTATTGCCAATTTGATAAAAAAATAA
Upstream 100 bases:
>100_bases CCGTCTGTTACGGGATGCAGGAACTGTGTGAAATCAACTGAAACTTTTTTATTTGTCAATGAAAATACAAAGACTTTTTA GCATTCTACTCTTCTGTTTG
Downstream 100 bases:
>100_bases GATTTATGTCAGAACAATCAGTAGAAAGGAAACTGGAAGATATGGAGATTGATTTATTGGATATATTTCGTAAAATTGTA GCAATTCGTAAGAAAATTTA
Product: polysialic acid transport protein kpsD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 789; Mature: 789
Protein sequence:
>789_residues MLGSGSLMAQSMSDSQVLEYVKDGIRQGKEQKQLASELARKGVTKEQAMRVKQLYEQQNNVNTSKSTGTDINESRLREET KENTSDMLEDHPTTQDLARGDQVFGRNIFNTRNLTFEPSVNLATPTNYRLGPGDEVIIDIWGASQNTIRQQISPEGTINI QKIGPVNLSGMTVSAANDYLKNALNKIYNGLNNTTDPTSDIRLTLGNIRTIQINVMGEVVQPGTYALSSFSTVFHALYRA GGVSDIGSLRNVQLVRNGKNIATIDVYEFIMKGNTQDDIRLQEGDVVIVPAYDVLVKISGKVKRPMRFEMKKEENLATLI KYAGGFEADAYTRSLRVVRQNGEEYEVNTVKDIDYSIYKMRNGDVVTAEAILNRFTNKLEIRGAVYRPGIYQLSGKLNTI RELVNEAQGLTGDAFLNRAVLYRQREDLTSEVVQIDIRSIMDGTSPNLALMKNDILYIPSIHDLEDRGNVTVHGEVAQPD SYPYADNMTLEDLIIQAGGLKEAASTVRIDVSRRIKNPRSTADNDTIGQMYTFSLKDGFVIDGQPGFILQPYDEVYVRRS PGYQAQQNVAIEGEILFGGNYAMTSREERLSDLVNKAGGPTNYAYLRGAKLTRVANASEKKRMGDVIRLMSRQLGEAMID SLGIRVEDTFTVGIDLEKALSNPKSNADLVLREGDVISIPNNNNTVTINGAVMVPNTVSYMQGKDVDYYLNQAGGYSDNA KKSKKFIVYMNGQVTKVKGSGKKQIEPGCEIIVPSKAKKKANIGNILGYATTFSTLGMMVASIANLIKK
Sequences:
>Translated_789_residues MLGSGSLMAQSMSDSQVLEYVKDGIRQGKEQKQLASELARKGVTKEQAMRVKQLYEQQNNVNTSKSTGTDINESRLREET KENTSDMLEDHPTTQDLARGDQVFGRNIFNTRNLTFEPSVNLATPTNYRLGPGDEVIIDIWGASQNTIRQQISPEGTINI QKIGPVNLSGMTVSAANDYLKNALNKIYNGLNNTTDPTSDIRLTLGNIRTIQINVMGEVVQPGTYALSSFSTVFHALYRA GGVSDIGSLRNVQLVRNGKNIATIDVYEFIMKGNTQDDIRLQEGDVVIVPAYDVLVKISGKVKRPMRFEMKKEENLATLI KYAGGFEADAYTRSLRVVRQNGEEYEVNTVKDIDYSIYKMRNGDVVTAEAILNRFTNKLEIRGAVYRPGIYQLSGKLNTI RELVNEAQGLTGDAFLNRAVLYRQREDLTSEVVQIDIRSIMDGTSPNLALMKNDILYIPSIHDLEDRGNVTVHGEVAQPD SYPYADNMTLEDLIIQAGGLKEAASTVRIDVSRRIKNPRSTADNDTIGQMYTFSLKDGFVIDGQPGFILQPYDEVYVRRS PGYQAQQNVAIEGEILFGGNYAMTSREERLSDLVNKAGGPTNYAYLRGAKLTRVANASEKKRMGDVIRLMSRQLGEAMID SLGIRVEDTFTVGIDLEKALSNPKSNADLVLREGDVISIPNNNNTVTINGAVMVPNTVSYMQGKDVDYYLNQAGGYSDNA KKSKKFIVYMNGQVTKVKGSGKKQIEPGCEIIVPSKAKKKANIGNILGYATTFSTLGMMVASIANLIKK >Mature_789_residues MLGSGSLMAQSMSDSQVLEYVKDGIRQGKEQKQLASELARKGVTKEQAMRVKQLYEQQNNVNTSKSTGTDINESRLREET KENTSDMLEDHPTTQDLARGDQVFGRNIFNTRNLTFEPSVNLATPTNYRLGPGDEVIIDIWGASQNTIRQQISPEGTINI QKIGPVNLSGMTVSAANDYLKNALNKIYNGLNNTTDPTSDIRLTLGNIRTIQINVMGEVVQPGTYALSSFSTVFHALYRA GGVSDIGSLRNVQLVRNGKNIATIDVYEFIMKGNTQDDIRLQEGDVVIVPAYDVLVKISGKVKRPMRFEMKKEENLATLI KYAGGFEADAYTRSLRVVRQNGEEYEVNTVKDIDYSIYKMRNGDVVTAEAILNRFTNKLEIRGAVYRPGIYQLSGKLNTI RELVNEAQGLTGDAFLNRAVLYRQREDLTSEVVQIDIRSIMDGTSPNLALMKNDILYIPSIHDLEDRGNVTVHGEVAQPD SYPYADNMTLEDLIIQAGGLKEAASTVRIDVSRRIKNPRSTADNDTIGQMYTFSLKDGFVIDGQPGFILQPYDEVYVRRS PGYQAQQNVAIEGEILFGGNYAMTSREERLSDLVNKAGGPTNYAYLRGAKLTRVANASEKKRMGDVIRLMSRQLGEAMID SLGIRVEDTFTVGIDLEKALSNPKSNADLVLREGDVISIPNNNNTVTINGAVMVPNTVSYMQGKDVDYYLNQAGGYSDNA KKSKKFIVYMNGQVTKVKGSGKKQIEPGCEIIVPSKAKKKANIGNILGYATTFSTLGMMVASIANLIKK
Specific function: Involved in the translocation of the polysialic acid capsule across the outer membrane to the cell surface. May function as the periplasmic binding element of the PSA transport system, in which it transiently interacts with the membrane component of the t
COG id: COG1596
COG function: function code M; Periplasmic protein involved in polysaccharide export
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli K5 kpsD [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003715 [H]
Pfam domain/function: PF02563 Poly_export [H]
EC number: NA
Molecular weight: Translated: 87233; Mature: 87233
Theoretical pI: Translated: 8.17; Mature: 8.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGSGSLMAQSMSDSQVLEYVKDGIRQGKEQKQLASELARKGVTKEQAMRVKQLYEQQNN CCCCCCHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC VNTSKSTGTDINESRLREETKENTSDMLEDHPTTQDLARGDQVFGRNIFNTRNLTFEPSV CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHCCCCCCCCCEEECCCC NLATPTNYRLGPGDEVIIDIWGASQNTIRQQISPEGTINIQKIGPVNLSGMTVSAANDYL CCCCCCCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCEEEEEECCCCCCCEEEHHHHHHH KNALNKIYNGLNNTTDPTSDIRLTLGNIRTIQINVMGEVVQPGTYALSSFSTVFHALYRA HHHHHHHHHCCCCCCCCCCCEEEEECCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHC GGVSDIGSLRNVQLVRNGKNIATIDVYEFIMKGNTQDDIRLQEGDVVIVPAYDVLVKISG CCCCHHHCCCCEEEEECCCCEEEEHHHHHHHCCCCCCCCEEECCCEEEEECCEEEEEECC KVKRPMRFEMKKEENLATLIKYAGGFEADAYTRSLRVVRQNGEEYEVNTVKDIDYSIYKM CCCCCCEECCCHHCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEE RNGDVVTAEAILNRFTNKLEIRGAVYRPGIYQLSGKLNTIRELVNEAQGLTGDAFLNRAV CCCCEEEHHHHHHHCCCCEEECEEEECCCCEEECCCHHHHHHHHHHHCCCCHHHHHHHHH LYRQREDLTSEVVQIDIRSIMDGTSPNLALMKNDILYIPSIHDLEDRGNVTVHGEVAQPD HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEECCCCCCCCCCCEEEEEEECCCC SYPYADNMTLEDLIIQAGGLKEAASTVRIDVSRRIKNPRSTADNDTIGQMYTFSLKDGFV CCCCCCCCCHHHHHHHCCCCHHHHHEEEEEHHHHCCCCCCCCCCCCCCCEEEEEECCCEE IDGQPGFILQPYDEVYVRRSPGYQAQQNVAIEGEILFGGNYAMTSREERLSDLVNKAGGP ECCCCCEEECCHHHEEEECCCCCCCCCCEEEEEEEEECCCEEECCHHHHHHHHHHHCCCC TNYAYLRGAKLTRVANASEKKRMGDVIRLMSRQLGEAMIDSLGIRVEDTFTVGIDLEKAL CCEEEEECCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEHHHHH SNPKSNADLVLREGDVISIPNNNNTVTINGAVMVPNTVSYMQGKDVDYYLNQAGGYSDNA CCCCCCCCEEEECCCEEECCCCCCEEEEEEEEECCCCHHHHCCCCCHHHHHCCCCCCCCC KKSKKFIVYMNGQVTKVKGSGKKQIEPGCEIIVPSKAKKKANIGNILGYATTFSTLGMMV CCCCEEEEEECCEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH ASIANLIKK HHHHHHHCC >Mature Secondary Structure MLGSGSLMAQSMSDSQVLEYVKDGIRQGKEQKQLASELARKGVTKEQAMRVKQLYEQQNN CCCCCCHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC VNTSKSTGTDINESRLREETKENTSDMLEDHPTTQDLARGDQVFGRNIFNTRNLTFEPSV CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHCCCCCCCCCEEECCCC NLATPTNYRLGPGDEVIIDIWGASQNTIRQQISPEGTINIQKIGPVNLSGMTVSAANDYL CCCCCCCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCEEEEEECCCCCCCEEEHHHHHHH KNALNKIYNGLNNTTDPTSDIRLTLGNIRTIQINVMGEVVQPGTYALSSFSTVFHALYRA HHHHHHHHHCCCCCCCCCCCEEEEECCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHC GGVSDIGSLRNVQLVRNGKNIATIDVYEFIMKGNTQDDIRLQEGDVVIVPAYDVLVKISG CCCCHHHCCCCEEEEECCCCEEEEHHHHHHHCCCCCCCCEEECCCEEEEECCEEEEEECC KVKRPMRFEMKKEENLATLIKYAGGFEADAYTRSLRVVRQNGEEYEVNTVKDIDYSIYKM CCCCCCEECCCHHCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEE RNGDVVTAEAILNRFTNKLEIRGAVYRPGIYQLSGKLNTIRELVNEAQGLTGDAFLNRAV CCCCEEEHHHHHHHCCCCEEECEEEECCCCEEECCCHHHHHHHHHHHCCCCHHHHHHHHH LYRQREDLTSEVVQIDIRSIMDGTSPNLALMKNDILYIPSIHDLEDRGNVTVHGEVAQPD HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEECCCCCCCCCCCEEEEEEECCCC SYPYADNMTLEDLIIQAGGLKEAASTVRIDVSRRIKNPRSTADNDTIGQMYTFSLKDGFV CCCCCCCCCHHHHHHHCCCCHHHHHEEEEEHHHHCCCCCCCCCCCCCCCEEEEEECCCEE IDGQPGFILQPYDEVYVRRSPGYQAQQNVAIEGEILFGGNYAMTSREERLSDLVNKAGGP ECCCCCEEECCHHHEEEECCCCCCCCCCEEEEEEEEECCCEEECCHHHHHHHHHHHCCCC TNYAYLRGAKLTRVANASEKKRMGDVIRLMSRQLGEAMIDSLGIRVEDTFTVGIDLEKAL CCEEEEECCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEHHHHH SNPKSNADLVLREGDVISIPNNNNTVTINGAVMVPNTVSYMQGKDVDYYLNQAGGYSDNA CCCCCCCCEEEECCCEEECCCCCCEEEEEEEEECCCCHHHHCCCCCHHHHHCCCCCCCCC KKSKKFIVYMNGQVTKVKGSGKKQIEPGCEIIVPSKAKKKANIGNILGYATTFSTLGMMV CCCCEEEEEECCEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH ASIANLIKK HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8021185 [H]