| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is ybjZ [C]
Identifier: 29346875
GI number: 29346875
Start: 1804059
End: 1806479
Strand: Reverse
Name: ybjZ [C]
Synonym: BT_1465
Alternate gene names: 29346875
Gene position: 1806479-1804059 (Counterclockwise)
Preceding gene: 29346876
Following gene: 29346873
Centisome position: 28.86
GC content: 45.35
Gene sequence:
>2421_bases ATGATAGGAAATTATTGGAATAGTGCCTATCGGAATCTGATGAAGCGGAAGAAGTTCAGCTTCATTAATGTGTTTGGACT GGCGATCGGCATGGCATCGGCGTTACTGATTCTGACGTATGTAACTTTTGAGTTCAGTTTTGACAAGATGCACACGAAAT ATCCCCATATTTACCGTGTGCAAAGTACATTCCGCGAAGGGGAGGTGCTGACCGATAACTGGGCAAGCAGCTCTTTCGGA TACGGCTCGGCAATGAAAGAGAATCTTGCGGGAATTGAAGATTATACCCGAATCGGCTCTCTGCTCCAACCTGAACAGAT TGTGAAGTATGGTGAGTTGACACTGCGGGAAAACCAGATAGCTTATGCCGATCCGGGCTTTTTCCGTCTTTTCGATTTCG AGCTTTTGAAAGGTGATAAAAAGACCAGCCTTTCGATGCCGGGACAAGTCGTAATCACCGAGCGCATTGCCCGCAAATAT TTCAAAGAGGAAGACCCTATCGGAAAGATTCTTATCTTTACCGGTCCCTATTATAAGATATCGTGTGAAGTGACCGGAGT CATGGAGGAAATGCCTTCCAATTCCCATATACATTATAACTTCCTGATTTCGTATACATCTCTGCCCAAGTTTATACATG AATACTGGTATAAGCATGAAGCATATACGTATGTTCTGCTCGATTCGCCGGAGAGGGAAGCGGAAATAGAAAGAGAGTTT CCCGTCATGGCGGAAAAGTACAAGACGGAGGAAGCGTTGAAAAACAAAACATGGGGAGTCGATTTGGTTCCTCTGGCAGA TATACATCTCACTCCGCAATTGGGTTATGAAATGGAGACAAAAGGAAATCGTTCTGCCATGATTGCACTTGTCTTTGCAG CCATTGCCATTCTGGCTATTGCCTGGATAAACTATATCAATCTGACAGTAGCCCGTTCGATGGAGCGTGCCAGGGAAGTC GGAGTGCGTCGGGTAGTGGGTGCTTTCCGCAAGCAGTTGATTCATCAGTTCCTGTTCGAAGCGCTGGTTATGAATCTGAT TGCTTTTATATTGGCGGTAGGACTGATAGAGCTGATTCTTCCGTACTTTAATCAACTGGTGGGACGTACGGTCACTTTCT CCGTTTGGCTGATGGATTATTGGTGGATGCTGCTGGTTCTTGTTTTTATCGCAGGGATATTCCTTTCCGGATATTATCCG GCATTGGCTTTGCTGAACCGTAAACCGATTACCCTGTTGAAAGGAAAGTTTTTGCATAGCAAGTCCGGAGAACGGACTCG TCAGGTGTTGGTTATCATTCAATATACGGCCTCTATGATACTGCTTTGTGGAACATTGATCGTGTTTGCACAGCTGAATT TTATGCGCAGCCAATCATTAGGGGTGAAAACCGACCAGACATTAGTCATTAAATTTCCCGGACGTACAGACGGGCTGAAT GTGAAGCTGGAAGCGATGAAGAAAGCGATAATGCGGTTGCCACTGGTGCATAGTGTCGCAGCTTCCGGTGCTGTGCCGGG CGAGGAGGTGGCTACTTTCCTTTCCAATCGCCGTACCAATGACGCTTTGAAGCAGAATCGGCTTTATGAGATGCTGGCCT GCGATCCGGATTATATAGAGGCATATGGTTTGCAAGTGATAGCCGGACGGGGCTTTTCAGAAGAGTACGGAGACGATGTA GATAAACTGGTGATTAATGAGACGGCCGTACGCAATCTGGGCTTTGCTTCCAATGATGAGGCGATAGGAGAGTTGGTAAC AGTAGAATGTACCGATGCTCCGATGCAGATTATCGGAGTGGTCAAAGATTATCATCAGCAGGCGTTGAGTAAGAATTATA CTCCTATTATGCTGATTCATAAAGATAAGATAGACTGGTTGCCACAACGCTATATTTCTATCGTAATGACTTCCGGCAAT CCCCGCGAACTGGTATCGCAGGTACAGGAAATATGGAATCGGTACTTTGCTGATTCCAGTTTCGATTATTTTTTCCTCGA TCAGTTCTTCGACCATCAGTATCGTCAGGATGAAGTATTCGGGGTGATGATAGGTTCTTTCACCGGATTAGCGATATTCA TATCCTGTCTGGGACTTTGGGTATTGGTGATGTTTTCCTGTTCCACCCGTACGAAAGAGATGGGTATACGTAAAGTCTTG GGAGCTTCCCGCTGGAATCTTTTCTATCAGTTGGTCAAAGGATTTTTCCTGCTGATTCTGATAGCGGTTGTGATTGCTCT TCCGGTAGCCTGGTTCAGTATGAACGCCTGGTTGAGTCATTATGCTTTCCGGACGGATTTAGAAGCCTGGTTCTTTATTG TGCCCGTATTGTTGATGTTGTTCATTTCATTCGTGACGGTGGCCTTTCAGACAATGAAAATAATAATGAGCAAACCTGCT CGTTCGTTAAGATATGAATAG
Upstream 100 bases:
>100_bases CGTATGCGCATCGGATTATCCGGTTGTTGGACGGACAGATTGTATCCGAAAACATCAACCGTCCGTTAGAAAAAAGTACG TCCTCTAAAAACGAAGCTGT
Downstream 100 bases:
>100_bases TTTTTAGATCACTCCTTCGGGTATTCGTTAATATCCGGAGGAATTATGTTAAATGTTAACGAGTCTGCTACTTCTATTAA ACCATGTTATAAGATGCTCC
Product: putative ABC transporter permease
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 806; Mature: 806
Protein sequence:
>806_residues MIGNYWNSAYRNLMKRKKFSFINVFGLAIGMASALLILTYVTFEFSFDKMHTKYPHIYRVQSTFREGEVLTDNWASSSFG YGSAMKENLAGIEDYTRIGSLLQPEQIVKYGELTLRENQIAYADPGFFRLFDFELLKGDKKTSLSMPGQVVITERIARKY FKEEDPIGKILIFTGPYYKISCEVTGVMEEMPSNSHIHYNFLISYTSLPKFIHEYWYKHEAYTYVLLDSPEREAEIEREF PVMAEKYKTEEALKNKTWGVDLVPLADIHLTPQLGYEMETKGNRSAMIALVFAAIAILAIAWINYINLTVARSMERAREV GVRRVVGAFRKQLIHQFLFEALVMNLIAFILAVGLIELILPYFNQLVGRTVTFSVWLMDYWWMLLVLVFIAGIFLSGYYP ALALLNRKPITLLKGKFLHSKSGERTRQVLVIIQYTASMILLCGTLIVFAQLNFMRSQSLGVKTDQTLVIKFPGRTDGLN VKLEAMKKAIMRLPLVHSVAASGAVPGEEVATFLSNRRTNDALKQNRLYEMLACDPDYIEAYGLQVIAGRGFSEEYGDDV DKLVINETAVRNLGFASNDEAIGELVTVECTDAPMQIIGVVKDYHQQALSKNYTPIMLIHKDKIDWLPQRYISIVMTSGN PRELVSQVQEIWNRYFADSSFDYFFLDQFFDHQYRQDEVFGVMIGSFTGLAIFISCLGLWVLVMFSCSTRTKEMGIRKVL GASRWNLFYQLVKGFFLLILIAVVIALPVAWFSMNAWLSHYAFRTDLEAWFFIVPVLLMLFISFVTVAFQTMKIIMSKPA RSLRYE
Sequences:
>Translated_806_residues MIGNYWNSAYRNLMKRKKFSFINVFGLAIGMASALLILTYVTFEFSFDKMHTKYPHIYRVQSTFREGEVLTDNWASSSFG YGSAMKENLAGIEDYTRIGSLLQPEQIVKYGELTLRENQIAYADPGFFRLFDFELLKGDKKTSLSMPGQVVITERIARKY FKEEDPIGKILIFTGPYYKISCEVTGVMEEMPSNSHIHYNFLISYTSLPKFIHEYWYKHEAYTYVLLDSPEREAEIEREF PVMAEKYKTEEALKNKTWGVDLVPLADIHLTPQLGYEMETKGNRSAMIALVFAAIAILAIAWINYINLTVARSMERAREV GVRRVVGAFRKQLIHQFLFEALVMNLIAFILAVGLIELILPYFNQLVGRTVTFSVWLMDYWWMLLVLVFIAGIFLSGYYP ALALLNRKPITLLKGKFLHSKSGERTRQVLVIIQYTASMILLCGTLIVFAQLNFMRSQSLGVKTDQTLVIKFPGRTDGLN VKLEAMKKAIMRLPLVHSVAASGAVPGEEVATFLSNRRTNDALKQNRLYEMLACDPDYIEAYGLQVIAGRGFSEEYGDDV DKLVINETAVRNLGFASNDEAIGELVTVECTDAPMQIIGVVKDYHQQALSKNYTPIMLIHKDKIDWLPQRYISIVMTSGN PRELVSQVQEIWNRYFADSSFDYFFLDQFFDHQYRQDEVFGVMIGSFTGLAIFISCLGLWVLVMFSCSTRTKEMGIRKVL GASRWNLFYQLVKGFFLLILIAVVIALPVAWFSMNAWLSHYAFRTDLEAWFFIVPVLLMLFISFVTVAFQTMKIIMSKPA RSLRYE >Mature_806_residues MIGNYWNSAYRNLMKRKKFSFINVFGLAIGMASALLILTYVTFEFSFDKMHTKYPHIYRVQSTFREGEVLTDNWASSSFG YGSAMKENLAGIEDYTRIGSLLQPEQIVKYGELTLRENQIAYADPGFFRLFDFELLKGDKKTSLSMPGQVVITERIARKY FKEEDPIGKILIFTGPYYKISCEVTGVMEEMPSNSHIHYNFLISYTSLPKFIHEYWYKHEAYTYVLLDSPEREAEIEREF PVMAEKYKTEEALKNKTWGVDLVPLADIHLTPQLGYEMETKGNRSAMIALVFAAIAILAIAWINYINLTVARSMERAREV GVRRVVGAFRKQLIHQFLFEALVMNLIAFILAVGLIELILPYFNQLVGRTVTFSVWLMDYWWMLLVLVFIAGIFLSGYYP ALALLNRKPITLLKGKFLHSKSGERTRQVLVIIQYTASMILLCGTLIVFAQLNFMRSQSLGVKTDQTLVIKFPGRTDGLN VKLEAMKKAIMRLPLVHSVAASGAVPGEEVATFLSNRRTNDALKQNRLYEMLACDPDYIEAYGLQVIAGRGFSEEYGDDV DKLVINETAVRNLGFASNDEAIGELVTVECTDAPMQIIGVVKDYHQQALSKNYTPIMLIHKDKIDWLPQRYISIVMTSGN PRELVSQVQEIWNRYFADSSFDYFFLDQFFDHQYRQDEVFGVMIGSFTGLAIFISCLGLWVLVMFSCSTRTKEMGIRKVL GASRWNLFYQLVKGFFLLILIAVVIALPVAWFSMNAWLSHYAFRTDLEAWFFIVPVLLMLFISFVTVAFQTMKIIMSKPA RSLRYE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 92402; Mature: 92402
Theoretical pI: Translated: 8.27; Mature: 8.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIGNYWNSAYRNLMKRKKFSFINVFGLAIGMASALLILTYVTFEFSFDKMHTKYPHIYRV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHCCCCCCEEEE QSTFREGEVLTDNWASSSFGYGSAMKENLAGIEDYTRIGSLLQPEQIVKYGELTLRENQI HHHHCCCCEEECCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEECCEE AYADPGFFRLFDFELLKGDKKTSLSMPGQVVITERIARKYFKEEDPIGKILIFTGPYYKI EECCCCCEEEEHHHHHCCCCCCCCCCCCCEEHHHHHHHHHCCCCCCCCEEEEEECCCEEE SCEVTGVMEEMPSNSHIHYNFLISYTSLPKFIHEYWYKHEAYTYVLLDSPEREAEIEREF EEEEEHHHHHCCCCCCEEEEEEEEHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCC PVMAEKYKTEEALKNKTWGVDLVPLADIHLTPQLGYEMETKGNRSAMIALVFAAIAILAI CHHHHHHHHHHHHCCCCCCEEEEEECCEEECCCCCCEECCCCCCHHHHHHHHHHHHHHHH AWINYINLTVARSMERAREVGVRRVVGAFRKQLIHQFLFEALVMNLIAFILAVGLIELIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PYFNQLVGRTVTFSVWLMDYWWMLLVLVFIAGIFLSGYYPALALLNRKPITLLKGKFLHS HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHCCCHHCC KSGERTRQVLVIIQYTASMILLCGTLIVFAQLNFMRSQSLGVKTDQTLVIKFPGRTDGLN CCCCCHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCC VKLEAMKKAIMRLPLVHSVAASGAVPGEEVATFLSNRRTNDALKQNRLYEMLACDPDYIE EEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH AYGLQVIAGRGFSEEYGDDVDKLVINETAVRNLGFASNDEAIGELVTVECTDAPMQIIGV HHCEEEEECCCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHH VKDYHQQALSKNYTPIMLIHKDKIDWLPQRYISIVMTSGNPRELVSQVQEIWNRYFADSS HHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCC FDYFFLDQFFDHQYRQDEVFGVMIGSFTGLAIFISCLGLWVLVMFSCSTRTKEMGIRKVL CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH GASRWNLFYQLVKGFFLLILIAVVIALPVAWFSMNAWLSHYAFRTDLEAWFFIVPVLLML CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FISFVTVAFQTMKIIMSKPARSLRYE HHHHHHHHHHHHHHHHHCCHHHCCCC >Mature Secondary Structure MIGNYWNSAYRNLMKRKKFSFINVFGLAIGMASALLILTYVTFEFSFDKMHTKYPHIYRV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHCCCCCCEEEE QSTFREGEVLTDNWASSSFGYGSAMKENLAGIEDYTRIGSLLQPEQIVKYGELTLRENQI HHHHCCCCEEECCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEECCEE AYADPGFFRLFDFELLKGDKKTSLSMPGQVVITERIARKYFKEEDPIGKILIFTGPYYKI EECCCCCEEEEHHHHHCCCCCCCCCCCCCEEHHHHHHHHHCCCCCCCCEEEEEECCCEEE SCEVTGVMEEMPSNSHIHYNFLISYTSLPKFIHEYWYKHEAYTYVLLDSPEREAEIEREF EEEEEHHHHHCCCCCCEEEEEEEEHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCC PVMAEKYKTEEALKNKTWGVDLVPLADIHLTPQLGYEMETKGNRSAMIALVFAAIAILAI CHHHHHHHHHHHHCCCCCCEEEEEECCEEECCCCCCEECCCCCCHHHHHHHHHHHHHHHH AWINYINLTVARSMERAREVGVRRVVGAFRKQLIHQFLFEALVMNLIAFILAVGLIELIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PYFNQLVGRTVTFSVWLMDYWWMLLVLVFIAGIFLSGYYPALALLNRKPITLLKGKFLHS HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHCCCHHCC KSGERTRQVLVIIQYTASMILLCGTLIVFAQLNFMRSQSLGVKTDQTLVIKFPGRTDGLN CCCCCHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCC VKLEAMKKAIMRLPLVHSVAASGAVPGEEVATFLSNRRTNDALKQNRLYEMLACDPDYIE EEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH AYGLQVIAGRGFSEEYGDDVDKLVINETAVRNLGFASNDEAIGELVTVECTDAPMQIIGV HHCEEEEECCCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHH VKDYHQQALSKNYTPIMLIHKDKIDWLPQRYISIVMTSGNPRELVSQVQEIWNRYFADSS HHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCC FDYFFLDQFFDHQYRQDEVFGVMIGSFTGLAIFISCLGLWVLVMFSCSTRTKEMGIRKVL CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH GASRWNLFYQLVKGFFLLILIAVVIALPVAWFSMNAWLSHYAFRTDLEAWFFIVPVLLML CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FISFVTVAFQTMKIIMSKPARSLRYE HHHHHHHHHHHHHHHHHCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA