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The map label for this gene is ypdA [H]

Identifier: 29346868

GI number: 29346868

Start: 1795533

End: 1796639

Strand: Reverse

Name: ypdA [H]

Synonym: BT_1458

Alternate gene names: 29346868

Gene position: 1796639-1795533 (Counterclockwise)

Preceding gene: 29346869

Following gene: 29346867

Centisome position: 28.7

GC content: 43.81

Gene sequence:

>1107_bases
ATGAGAATAAGTACAAACGATAAAAATACACTCGACAGGAATCCCGGTGACGGAACCATGAACGGCAAAAGTGTCACCGC
TTTTCTGCTGAGTCCTCATTGCAGGATATACAGACATATCCTCTTGCAGGTGGCTGTTCTGCTGATTACAATCAATGTTT
TTTGGTACGAGCCTTTGCAGGTGGTCTCTCTCTTGAAACGCTTTGGAGGCTGTCTGGTCTATTTCTTGTCTATGAATGCG
GTGATATATACCAATCTGTACGTCCTGGTTCCTTCTTTTCTGCTAAAGAACCGTTTGGGTGGTTATGTTCTGGCTGCGAT
AGTTACCAACTTAGTGGTCATCCTTTTCCTTTCAGTTACGCAGGGAATGCTTTTTGAAGTTATTTTGCCTGTCAGGAATC
CCGATGGATTTGCCACTTTCATCAACACCTTTTCGGGGATACTCACTATGGGTTTTGTCACCGCAGGTTCGGCAGCTATT
TCATTGTTCACTCATTGGCTGCGTCATAATCTGCGCATTGATCAGCTGGAATCTACCACTTTGCAATCGGAGTTGAAGTT
CCTTAAGAGCCAGATTAACCCGCACTTTCTGTTCAATATGCTGAATAACGCCAATGTACTGATAAAGCGGAATCCGGAAG
AGGCTTCCAAAGTTCTTTTCAAACTGGAAGATTTGCTGCGGTATCAGATTAATGACAGTTCGCGCGAAAGGGTTGCTTTA
GCCTCGGATATCCGTTTTCTGAACGACTATCTGAATCTGGAAAAGATACGCCGGGATCATTTTCAGTTTACAATGGAGCA
GGAAGGGGACATTGGCTCCATCTGGATTCAGCCGTTATTGTTTATCCCGTTTGTGGAGAACGCGGTGAAGCATAGTTTTG
ATAGCGAGCATCCTTCGTATGTACATCTTTCTTTTAAGGTAGAAGAGAACCGGTTGGAGTTCCGTTGTGAAAATACGATG
CCGGCGGTTGCTGTCAGCAACAAGGTAGGAGGAATCGGACTTGCGAATATTCAGCGTAGATTAGGATTGTTATATCCCGA
CCGTTATGAATTGGAGCAGATAGAGAATGAAAATCGGTATATGGTAACTTTATGTATAACGTTATGA

Upstream 100 bases:

>100_bases
TGGAACGGATCAGACAAAGGCTGGACTTATTGTATGGCGACCGTTACGGACTATCTTTGACTACGGAATGTATAAGACTG
GAACTGAATGGAGGGGAACA

Downstream 100 bases:

>100_bases
ATTGTATTATTGTAGACGATGAACCATTGGCACGGGAGGCTATGAAATTGCTGATAGAGGAGGCGGAATGTCTTCAGCTA
GTGGGAAGTTTTAACAGTGC

Product: putative two-component system sensor histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MRISTNDKNTLDRNPGDGTMNGKSVTAFLLSPHCRIYRHILLQVAVLLITINVFWYEPLQVVSLLKRFGGCLVYFLSMNA
VIYTNLYVLVPSFLLKNRLGGYVLAAIVTNLVVILFLSVTQGMLFEVILPVRNPDGFATFINTFSGILTMGFVTAGSAAI
SLFTHWLRHNLRIDQLESTTLQSELKFLKSQINPHFLFNMLNNANVLIKRNPEEASKVLFKLEDLLRYQINDSSRERVAL
ASDIRFLNDYLNLEKIRRDHFQFTMEQEGDIGSIWIQPLLFIPFVENAVKHSFDSEHPSYVHLSFKVEENRLEFRCENTM
PAVAVSNKVGGIGLANIQRRLGLLYPDRYELEQIENENRYMVTLCITL

Sequences:

>Translated_368_residues
MRISTNDKNTLDRNPGDGTMNGKSVTAFLLSPHCRIYRHILLQVAVLLITINVFWYEPLQVVSLLKRFGGCLVYFLSMNA
VIYTNLYVLVPSFLLKNRLGGYVLAAIVTNLVVILFLSVTQGMLFEVILPVRNPDGFATFINTFSGILTMGFVTAGSAAI
SLFTHWLRHNLRIDQLESTTLQSELKFLKSQINPHFLFNMLNNANVLIKRNPEEASKVLFKLEDLLRYQINDSSRERVAL
ASDIRFLNDYLNLEKIRRDHFQFTMEQEGDIGSIWIQPLLFIPFVENAVKHSFDSEHPSYVHLSFKVEENRLEFRCENTM
PAVAVSNKVGGIGLANIQRRLGLLYPDRYELEQIENENRYMVTLCITL
>Mature_368_residues
MRISTNDKNTLDRNPGDGTMNGKSVTAFLLSPHCRIYRHILLQVAVLLITINVFWYEPLQVVSLLKRFGGCLVYFLSMNA
VIYTNLYVLVPSFLLKNRLGGYVLAAIVTNLVVILFLSVTQGMLFEVILPVRNPDGFATFINTFSGILTMGFVTAGSAAI
SLFTHWLRHNLRIDQLESTTLQSELKFLKSQINPHFLFNMLNNANVLIKRNPEEASKVLFKLEDLLRYQINDSSRERVAL
ASDIRFLNDYLNLEKIRRDHFQFTMEQEGDIGSIWIQPLLFIPFVENAVKHSFDSEHPSYVHLSFKVEENRLEFRCENTM
PAVAVSNKVGGIGLANIQRRLGLLYPDRYELEQIENENRYMVTLCITL

Specific function: Unknown

COG id: COG2972

COG function: function code T; Predicted signal transduction protein with a C-terminal ATPase domain

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788723, Length=195, Percent_Identity=29.7435897435897, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788446, Length=170, Percent_Identity=31.1764705882353, Blast_Score=82, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR010559
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF02518 HATPase_c; PF06580 His_kinase [H]

EC number: NA

Molecular weight: Translated: 42174; Mature: 42174

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRISTNDKNTLDRNPGDGTMNGKSVTAFLLSPHCRIYRHILLQVAVLLITINVFWYEPLQ
CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHH
VVSLLKRFGGCLVYFLSMNAVIYTNLYVLVPSFLLKNRLGGYVLAAIVTNLVVILFLSVT
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
QGMLFEVILPVRNPDGFATFINTFSGILTMGFVTAGSAAISLFTHWLRHNLRIDQLESTT
HHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LQSELKFLKSQINPHFLFNMLNNANVLIKRNPEEASKVLFKLEDLLRYQINDSSRERVAL
HHHHHHHHHHHCCHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
ASDIRFLNDYLNLEKIRRDHFQFTMEQEGDIGSIWIQPLLFIPFVENAVKHSFDSEHPSY
HHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
VHLSFKVEENRLEFRCENTMPAVAVSNKVGGIGLANIQRRLGLLYPDRYELEQIENENRY
EEEEEEEECCCEEEEECCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCE
MVTLCITL
EEEEEEEC
>Mature Secondary Structure
MRISTNDKNTLDRNPGDGTMNGKSVTAFLLSPHCRIYRHILLQVAVLLITINVFWYEPLQ
CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHH
VVSLLKRFGGCLVYFLSMNAVIYTNLYVLVPSFLLKNRLGGYVLAAIVTNLVVILFLSVT
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
QGMLFEVILPVRNPDGFATFINTFSGILTMGFVTAGSAAISLFTHWLRHNLRIDQLESTT
HHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LQSELKFLKSQINPHFLFNMLNNANVLIKRNPEEASKVLFKLEDLLRYQINDSSRERVAL
HHHHHHHHHHHCCHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
ASDIRFLNDYLNLEKIRRDHFQFTMEQEGDIGSIWIQPLLFIPFVENAVKHSFDSEHPSY
HHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
VHLSFKVEENRLEFRCENTMPAVAVSNKVGGIGLANIQRRLGLLYPDRYELEQIENENRY
EEEEEEEECCCEEEEECCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCE
MVTLCITL
EEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]