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The map label for this gene is msmR [H]

Identifier: 29346795

GI number: 29346795

Start: 1712570

End: 1713448

Strand: Reverse

Name: msmR [H]

Synonym: BT_1385

Alternate gene names: 29346795

Gene position: 1713448-1712570 (Counterclockwise)

Preceding gene: 29346796

Following gene: 29346794

Centisome position: 27.37

GC content: 38.11

Gene sequence:

>879_bases
ATGAAAAATCTGATTCCCCGATATACTTTCTATAAGAATAAGTATGGAAGTGAACTTTTGATAGATGTCGTCGAACTGAA
ATACGTAAAGAAGTTCCTCTCTCAGAGTTCTGTCCACACGCTGACTTACTATGATATCACGTTTGTCACAGAAGGGGAGG
GCAAGTTTTCGATAGATAATCAGACTAACGAGGCGGCTTCCCGTGATGTGTTTTTCTCTAAACCGGGAGAGATTCGGAAC
TGGGATACCCGCCACATAGTCAATGGTTATGCTTTGATCTTTGAAGATGAGTTTTTATCTTCTCTTTTTAAGGATTCTCT
CTTTGTGCAGCATCTTTCATTCTTCCAGTCGGGAAAGACATCATCCAAATTACAGTTGCCGGATGAACTTTATATGCGTA
TCCTTCAGATATTGCACAATATTAAAACGGAGATTGATTCGTACAGACAGAATGATGTGTATGTATTAAGGGCATTACTT
TATGAAGTCCTGATGTTGTTGGACCGGGAATATAAGAAAGTGAATATGGAAGAAGAAACTACATCCAAAGAGGTTGGTAA
TATCCATATTGACAAATTTATGAAGTTGGTTGAGAGCCATCTGAAAGAGCAGCATTCTGTTCAATATTATGCGGATAAAC
TTTGTATTACCCCGAATTATCTGAATGAGATTGTAACCTCTACAAAAGGGATTAGTGCGAAGCAATATATCCGGAATAAA
GTAATGGATGAGGCTAAGAGACTGCTTACTTATACAGATTTCCCTATATCGGATATTGCGTTTGAACTTCATTTCTCAAC
TGTCTCTTATTTTATCCGTAGCTTCCGGCAATATACTGGAACAACGCCATTACTTTATCGAAGAACGCATAAACCGTAA

Upstream 100 bases:

>100_bases
GAAGATATTCCTTGTTGAATAGTCTATTCTTACCCCGGTGCTTCTCAAAACCGGAAAGTCTTTGGATCATTTGATAAGGA
ATATTATTTTTGTAATTGAA

Downstream 100 bases:

>100_bases
AAAGTGATATTTCTCCCTTTCTTTCTGTTGCACTGATTGTCTTCTATATCCCTACTTTCGCATCAGATAATAACCAATTA
AAATTATTGAACGATGAGAG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MKNLIPRYTFYKNKYGSELLIDVVELKYVKKFLSQSSVHTLTYYDITFVTEGEGKFSIDNQTNEAASRDVFFSKPGEIRN
WDTRHIVNGYALIFEDEFLSSLFKDSLFVQHLSFFQSGKTSSKLQLPDELYMRILQILHNIKTEIDSYRQNDVYVLRALL
YEVLMLLDREYKKVNMEEETTSKEVGNIHIDKFMKLVESHLKEQHSVQYYADKLCITPNYLNEIVTSTKGISAKQYIRNK
VMDEAKRLLTYTDFPISDIAFELHFSTVSYFIRSFRQYTGTTPLLYRRTHKP

Sequences:

>Translated_292_residues
MKNLIPRYTFYKNKYGSELLIDVVELKYVKKFLSQSSVHTLTYYDITFVTEGEGKFSIDNQTNEAASRDVFFSKPGEIRN
WDTRHIVNGYALIFEDEFLSSLFKDSLFVQHLSFFQSGKTSSKLQLPDELYMRILQILHNIKTEIDSYRQNDVYVLRALL
YEVLMLLDREYKKVNMEEETTSKEVGNIHIDKFMKLVESHLKEQHSVQYYADKLCITPNYLNEIVTSTKGISAKQYIRNK
VMDEAKRLLTYTDFPISDIAFELHFSTVSYFIRSFRQYTGTTPLLYRRTHKP
>Mature_292_residues
MKNLIPRYTFYKNKYGSELLIDVVELKYVKKFLSQSSVHTLTYYDITFVTEGEGKFSIDNQTNEAASRDVFFSKPGEIRN
WDTRHIVNGYALIFEDEFLSSLFKDSLFVQHLSFFQSGKTSSKLQLPDELYMRILQILHNIKTEIDSYRQNDVYVLRALL
YEVLMLLDREYKKVNMEEETTSKEVGNIHIDKFMKLVESHLKEQHSVQYYADKLCITPNYLNEIVTSTKGISAKQYIRNK
VMDEAKRLLTYTDFPISDIAFELHFSTVSYFIRSFRQYTGTTPLLYRRTHKP

Specific function: Regulatory protein for the msm operon for multiple sugar metabolism. Activates the transcription of the msmEFGK, aga, dexB and gftA genes [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34481; Mature: 34481

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNLIPRYTFYKNKYGSELLIDVVELKYVKKFLSQSSVHTLTYYDITFVTEGEGKFSIDN
CCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEECC
QTNEAASRDVFFSKPGEIRNWDTRHIVNGYALIFEDEFLSSLFKDSLFVQHLSFFQSGKT
CCCHHHHCCCEECCCCCCCCCCCHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCC
SSKLQLPDELYMRILQILHNIKTEIDSYRQNDVYVLRALLYEVLMLLDREYKKVNMEEET
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHCCCCHHH
TSKEVGNIHIDKFMKLVESHLKEQHSVQYYADKLCITPNYLNEIVTSTKGISAKQYIRNK
HHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHCCCCHHHHHHHHH
VMDEAKRLLTYTDFPISDIAFELHFSTVSYFIRSFRQYTGTTPLLYRRTHKP
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC
>Mature Secondary Structure
MKNLIPRYTFYKNKYGSELLIDVVELKYVKKFLSQSSVHTLTYYDITFVTEGEGKFSIDN
CCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEECC
QTNEAASRDVFFSKPGEIRNWDTRHIVNGYALIFEDEFLSSLFKDSLFVQHLSFFQSGKT
CCCHHHHCCCEECCCCCCCCCCCHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCC
SSKLQLPDELYMRILQILHNIKTEIDSYRQNDVYVLRALLYEVLMLLDREYKKVNMEEET
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHCCCCHHH
TSKEVGNIHIDKFMKLVESHLKEQHSVQYYADKLCITPNYLNEIVTSTKGISAKQYIRNK
HHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHCCCCHHHHHHHHH
VMDEAKRLLTYTDFPISDIAFELHFSTVSYFIRSFRQYTGTTPLLYRRTHKP
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1537846; 12397186 [H]