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The map label for this gene is yjfH [C]

Identifier: 29346770

GI number: 29346770

Start: 1687459

End: 1688202

Strand: Reverse

Name: yjfH [C]

Synonym: BT_1360

Alternate gene names: 29346770

Gene position: 1688202-1687459 (Counterclockwise)

Preceding gene: 29346771

Following gene: 29346769

Centisome position: 26.97

GC content: 48.39

Gene sequence:

>744_bases
ATGACCGATAAAAGTGAAATGATTTTCGGCGTCCGTGCCGTCATAGAGGCCATTCAGGCTGGAAAAGAGATTGATAAGAT
TCTCGTTAAGAAAGACATTCAAAGTGATCTTTCCAAAGAGCTTTTCGCAGCATTGAAAGGATTGCTGATTCCTGTTCAGC
GTGTGCCGGTGGAACGTATCAACCGCATCACACGGAAGAATCATCAGGGTGTGGTTGCCTTCATTTCCTCTGTGACCTAT
CAGAAGACGGAAGACCTCGTTCCTTTCTTATTCGAGCAAGGCAAGAATCCGTTTTTTGTGATGCTGGATGGCATAACGGA
TGTGCGTAACTTTGGTGCGATAGCCCGTACCTGCGAATGTGCCGCGGTGGATGCGGTGATTATTCCTGCGCGTGGCAGCG
TATCGGTGAATGCCGATGCCATGAAGACTTCCGCAGGTGCGTTGCATACATTGCCTGTCTGCCGCGAACAGAATCTGCGT
GCGACTTTGCAGTATCTCAAGGACAGCGGTTTCCGTATCGTTGCCGCTACCGAGAAAGGAGATTATGACTATACGAAAGC
CGATTATACGGGACCGATGTGTATCATCATGGGAGCGGAGGACACCGGTGTATCATATGATCATCTGGCTCTCTGTGACG
AATGGGTGAAGATACCGATGCTGGGAACCATCGAATCTCTGAATGTTTCCGTAGCTGCCGGTATTTTGATTTATGAAGCT
GTGAAACAAAGAAACAACGACTGA

Upstream 100 bases:

>100_bases
GAGCGGAGCCACATTGACCGAGGCTGCCCTCAGCAATGCGAAGGCCCTGTTGGCCCGTACTTCATAATCCATAATTCAAA
ATTTATAATTCAAAATTACA

Downstream 100 bases:

>100_bases
TATGAAGAAACTTTTAATCTTACCTTTAGCGCTTTTCCTCTTGGTGCAGAGCGGTCTGGCGCAAACCCCGAAATGGGTGG
AGAAGGCGAAACGTGCTGTT

Product: tRNA/rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MTDKSEMIFGVRAVIEAIQAGKEIDKILVKKDIQSDLSKELFAALKGLLIPVQRVPVERINRITRKNHQGVVAFISSVTY
QKTEDLVPFLFEQGKNPFFVMLDGITDVRNFGAIARTCECAAVDAVIIPARGSVSVNADAMKTSAGALHTLPVCREQNLR
ATLQYLKDSGFRIVAATEKGDYDYTKADYTGPMCIIMGAEDTGVSYDHLALCDEWVKIPMLGTIESLNVSVAAGILIYEA
VKQRNND

Sequences:

>Translated_247_residues
MTDKSEMIFGVRAVIEAIQAGKEIDKILVKKDIQSDLSKELFAALKGLLIPVQRVPVERINRITRKNHQGVVAFISSVTY
QKTEDLVPFLFEQGKNPFFVMLDGITDVRNFGAIARTCECAAVDAVIIPARGSVSVNADAMKTSAGALHTLPVCREQNLR
ATLQYLKDSGFRIVAATEKGDYDYTKADYTGPMCIIMGAEDTGVSYDHLALCDEWVKIPMLGTIESLNVSVAAGILIYEA
VKQRNND
>Mature_246_residues
TDKSEMIFGVRAVIEAIQAGKEIDKILVKKDIQSDLSKELFAALKGLLIPVQRVPVERINRITRKNHQGVVAFISSVTYQ
KTEDLVPFLFEQGKNPFFVMLDGITDVRNFGAIARTCECAAVDAVIIPARGSVSVNADAMKTSAGALHTLPVCREQNLRA
TLQYLKDSGFRIVAATEKGDYDYTKADYTGPMCIIMGAEDTGVSYDHLALCDEWVKIPMLGTIESLNVSVAAGILIYEAV
KQRNND

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=270, Percent_Identity=27.4074074074074, Blast_Score=88, Evalue=8e-18,
Organism=Escherichia coli, GI1790623, Length=248, Percent_Identity=34.6774193548387, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1790083, Length=152, Percent_Identity=36.1842105263158, Blast_Score=86, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17555908, Length=264, Percent_Identity=27.6515151515151, Blast_Score=84, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27120; Mature: 26988

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDKSEMIFGVRAVIEAIQAGKEIDKILVKKDIQSDLSKELFAALKGLLIPVQRVPVERI
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHH
NRITRKNHQGVVAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGITDVRNFGAIARTCEC
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHH
AAVDAVIIPARGSVSVNADAMKTSAGALHTLPVCREQNLRATLQYLKDSGFRIVAATEKG
HEECEEEECCCCCEEECHHHHHCCCCCHHCCCCCCCCCHHHHHHHHHCCCCEEEEEECCC
DYDYTKADYTGPMCIIMGAEDTGVSYDHLALCDEWVKIPMLGTIESLNVSVAAGILIYEA
CCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHH
VKQRNND
HHHCCCC
>Mature Secondary Structure 
TDKSEMIFGVRAVIEAIQAGKEIDKILVKKDIQSDLSKELFAALKGLLIPVQRVPVERI
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHH
NRITRKNHQGVVAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGITDVRNFGAIARTCEC
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHH
AAVDAVIIPARGSVSVNADAMKTSAGALHTLPVCREQNLRATLQYLKDSGFRIVAATEKG
HEECEEEECCCCCEEECHHHHHCCCCCHHCCCCCCCCCHHHHHHHHHCCCCEEEEEECCC
DYDYTKADYTGPMCIIMGAEDTGVSYDHLALCDEWVKIPMLGTIESLNVSVAAGILIYEA
CCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHH
VKQRNND
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA