| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29346424
Identifier: 29346424
GI number: 29346424
Start: 1266184
End: 1267704
Strand: Reverse
Name: 29346424
Synonym: BT_1014
Alternate gene names: NA
Gene position: 1267704-1266184 (Counterclockwise)
Preceding gene: 29346426
Following gene: 29346419
Centisome position: 20.25
GC content: 41.09
Gene sequence:
>1521_bases ATGAGTATGAAAAAGAATTTGAAGTATTTGTTGTTGCTCTCGTTATTATCCTTCATGGCTTGCAATGGTGATGAAAAAAT AGATTCGGGTATGGTGCAGCAAGACGGTGAAGTATTGCAACTGAACGTTCGTGTTGGTGACTTTGCTATCAACGATGTTT CCAGTATTCGTGCTACGGATAGCGGAAGTACGGGTACTTTCGAAAATGGTGATCGTATCGGCATCATTGTGCTGGATGCA GATAATAATGTACTATCCGACAACATACCTTATCGATATGATGGTAACATTTGGAGCTTCGACAGCAATAACGATGAAGG AAAAACAACCATTTACTACGACAATAAAGCCACCGTTTACCTTGCCTACTTTCCGTATAGTAAGGAAGTGGATAACGTGA TTAACATAGATGATCTAAAAGGTAAATTCTTACCGCAGGGTGACCAACGCAGCAAAGATGCCTACCGTGCTTCCGATTTG TTGGTATGGAGTGACACGAGTGGTAGACCGTTAAAGAAATTGGATATAGTATTTGAACATGCTTATTCCTTACTTTCGTT GTCTCCTTCCATAAAATGCAAAATTAATGGAAGGAGAGACTTTACTTATGTTCCTTCTTCGATTAGTGATGTGAGTTTCA ATGTCGGAACAGAGCCTCTTTTCCCTTACCAAATGAATGATGGCAGTTACCAAATAATTATTTCTCCGAAAAGGGCAAAG GTTCGTTGGCTTTATGAATATAACAAAGAGATGTATAGTGGTGCGATGCCTGATACAGATTTATCTGCTAATACCTGTTA TACATTCACTCCGGTTTTAAAAGATATAGGTGATTATACATTGGATAAAGCTCAAATGGGCGATTTTTATTGCAAGGATG AAAGTAATAACGGCTATTTGATTCCCGGTGATGTTACTGCTCTTTCCGCAGATATGAACTGCTTGGGTATCGTTTTGAAG TCAGGTAAAGACAGTGAAGGCGAATGGGTAGACTACTGTAAATATAAACAGAAATATGGTATAACAGAGATGCATACCGT ACATGGTTACGTTCTTGCGCTTTATGATGCCAATGGAGGAAATGCTTGTACATGGGGGCTTTGGAGCCTAACTGATATAA ACAGAGGTGAGCCGAGCACCGGTTTCTATGGCTATAAGAATACACAGGGGATCATCTCGTTTGCGGAAAACGAGAATCGA ACTTTAAAGAATGGATTTCCCCCTGTCTATTGGGTAACGGATTATGAGTATAGCCATCCCGCTCCTGCAAACAGCAGTGG TTGGTTTTTACCCTCGCTAGGTCAATGCTGGTATTGGATGTACAATAAAGCTTATCTTTTATCCGCTGTCAATAAAGCTA CCGGGGATAATGACTATGGGTGGAAATTGGGGTATTGGTCGAGTTCGGAGGACGACTACGATCCGTTTCTCAACGCATAC TATGCCGACACCTACGTCGGCGCCATGGATTGGGATTATAAGAACAGTAAACATTGCGTCCGTGCGTGTCTTGCTTTTTG A
Upstream 100 bases:
>100_bases TCATATTAGTAGGAAATGCTCTTTATAATGACCATGCAAAGAGCGTATCGGATAAGAATTCTATCCGTGTCATCTTGACT TTTTAATAATATATAGAAAA
Downstream 100 bases:
>100_bases TTGAAATACCGCACTGATACGATAATTGTCAGTGCGGTATAATGATAACAGAGAATCTGTTTTTCTTTTATTCAGCTACT ACTTAAACTTTGAGAGATCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 506; Mature: 505
Protein sequence:
>506_residues MSMKKNLKYLLLLSLLSFMACNGDEKIDSGMVQQDGEVLQLNVRVGDFAINDVSSIRATDSGSTGTFENGDRIGIIVLDA DNNVLSDNIPYRYDGNIWSFDSNNDEGKTTIYYDNKATVYLAYFPYSKEVDNVINIDDLKGKFLPQGDQRSKDAYRASDL LVWSDTSGRPLKKLDIVFEHAYSLLSLSPSIKCKINGRRDFTYVPSSISDVSFNVGTEPLFPYQMNDGSYQIIISPKRAK VRWLYEYNKEMYSGAMPDTDLSANTCYTFTPVLKDIGDYTLDKAQMGDFYCKDESNNGYLIPGDVTALSADMNCLGIVLK SGKDSEGEWVDYCKYKQKYGITEMHTVHGYVLALYDANGGNACTWGLWSLTDINRGEPSTGFYGYKNTQGIISFAENENR TLKNGFPPVYWVTDYEYSHPAPANSSGWFLPSLGQCWYWMYNKAYLLSAVNKATGDNDYGWKLGYWSSSEDDYDPFLNAY YADTYVGAMDWDYKNSKHCVRACLAF
Sequences:
>Translated_506_residues MSMKKNLKYLLLLSLLSFMACNGDEKIDSGMVQQDGEVLQLNVRVGDFAINDVSSIRATDSGSTGTFENGDRIGIIVLDA DNNVLSDNIPYRYDGNIWSFDSNNDEGKTTIYYDNKATVYLAYFPYSKEVDNVINIDDLKGKFLPQGDQRSKDAYRASDL LVWSDTSGRPLKKLDIVFEHAYSLLSLSPSIKCKINGRRDFTYVPSSISDVSFNVGTEPLFPYQMNDGSYQIIISPKRAK VRWLYEYNKEMYSGAMPDTDLSANTCYTFTPVLKDIGDYTLDKAQMGDFYCKDESNNGYLIPGDVTALSADMNCLGIVLK SGKDSEGEWVDYCKYKQKYGITEMHTVHGYVLALYDANGGNACTWGLWSLTDINRGEPSTGFYGYKNTQGIISFAENENR TLKNGFPPVYWVTDYEYSHPAPANSSGWFLPSLGQCWYWMYNKAYLLSAVNKATGDNDYGWKLGYWSSSEDDYDPFLNAY YADTYVGAMDWDYKNSKHCVRACLAF >Mature_505_residues SMKKNLKYLLLLSLLSFMACNGDEKIDSGMVQQDGEVLQLNVRVGDFAINDVSSIRATDSGSTGTFENGDRIGIIVLDAD NNVLSDNIPYRYDGNIWSFDSNNDEGKTTIYYDNKATVYLAYFPYSKEVDNVINIDDLKGKFLPQGDQRSKDAYRASDLL VWSDTSGRPLKKLDIVFEHAYSLLSLSPSIKCKINGRRDFTYVPSSISDVSFNVGTEPLFPYQMNDGSYQIIISPKRAKV RWLYEYNKEMYSGAMPDTDLSANTCYTFTPVLKDIGDYTLDKAQMGDFYCKDESNNGYLIPGDVTALSADMNCLGIVLKS GKDSEGEWVDYCKYKQKYGITEMHTVHGYVLALYDANGGNACTWGLWSLTDINRGEPSTGFYGYKNTQGIISFAENENRT LKNGFPPVYWVTDYEYSHPAPANSSGWFLPSLGQCWYWMYNKAYLLSAVNKATGDNDYGWKLGYWSSSEDDYDPFLNAYY ADTYVGAMDWDYKNSKHCVRACLAF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57137; Mature: 57006
Theoretical pI: Translated: 4.52; Mature: 4.52
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMKKNLKYLLLLSLLSFMACNGDEKIDSGMVQQDGEVLQLNVRVGDFAINDVSSIRATD CCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCEEEEEEEECCEEECCHHHEEECC SGSTGTFENGDRIGIIVLDADNNVLSDNIPYRYDGNIWSFDSNNDEGKTTIYYDNKATVY CCCCCCCCCCCEEEEEEEECCCCEECCCCCEEECCCEEEECCCCCCCCEEEEECCCEEEE LAYFPYSKEVDNVINIDDLKGKFLPQGDQRSKDAYRASDLLVWSDTSGRPLKKLDIVFEH EEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHCEEEEEECCCCCCHHHHHHHHHH AYSLLSLSPSIKCKINGRRDFTYVPSSISDVSFNVGTEPLFPYQMNDGSYQIIISPKRAK HHHHHCCCCCEEEEECCCEEEEECCCCCCCEEEECCCCCCCEEEECCCCEEEEECCCCCE VRWLYEYNKEMYSGAMPDTDLSANTCYTFTPVLKDIGDYTLDKAQMGDFYCKDESNNGYL EEEEEECCHHHHCCCCCCCCCCCCCEEEEHHHHHHCCCCCCCHHHCCCEEEEECCCCCEE IPGDVTALSADMNCLGIVLKSGKDSEGEWVDYCKYKQKYGITEMHTVHGYVLALYDANGG ECCCCEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECEEEEEEEECCCC NACTWGLWSLTDINRGEPSTGFYGYKNTQGIISFAENENRTLKNGFPPVYWVTDYEYSHP CEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCEEEEECCCCCCC APANSSGWFLPSLGQCWYWMYNKAYLLSAVNKATGDNDYGWKLGYWSSSEDDYDPFLNAY CCCCCCCEECCCHHHHEEHHHCHHEEEHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHE YADTYVGAMDWDYKNSKHCVRACLAF ECCEEEEEECCCCCCCHHHHHHHHCC >Mature Secondary Structure SMKKNLKYLLLLSLLSFMACNGDEKIDSGMVQQDGEVLQLNVRVGDFAINDVSSIRATD CCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCEEEEEEEECCEEECCHHHEEECC SGSTGTFENGDRIGIIVLDADNNVLSDNIPYRYDGNIWSFDSNNDEGKTTIYYDNKATVY CCCCCCCCCCCEEEEEEEECCCCEECCCCCEEECCCEEEECCCCCCCCEEEEECCCEEEE LAYFPYSKEVDNVINIDDLKGKFLPQGDQRSKDAYRASDLLVWSDTSGRPLKKLDIVFEH EEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHCEEEEEECCCCCCHHHHHHHHHH AYSLLSLSPSIKCKINGRRDFTYVPSSISDVSFNVGTEPLFPYQMNDGSYQIIISPKRAK HHHHHCCCCCEEEEECCCEEEEECCCCCCCEEEECCCCCCCEEEECCCCEEEEECCCCCE VRWLYEYNKEMYSGAMPDTDLSANTCYTFTPVLKDIGDYTLDKAQMGDFYCKDESNNGYL EEEEEECCHHHHCCCCCCCCCCCCCEEEEHHHHHHCCCCCCCHHHCCCEEEEECCCCCEE IPGDVTALSADMNCLGIVLKSGKDSEGEWVDYCKYKQKYGITEMHTVHGYVLALYDANGG ECCCCEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECEEEEEEEECCCC NACTWGLWSLTDINRGEPSTGFYGYKNTQGIISFAENENRTLKNGFPPVYWVTDYEYSHP CEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCEEEEECCCCCCC APANSSGWFLPSLGQCWYWMYNKAYLLSAVNKATGDNDYGWKLGYWSSSEDDYDPFLNAY CCCCCCCEECCCHHHHEEHHHCHHEEEHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHE YADTYVGAMDWDYKNSKHCVRACLAF ECCEEEEEECCCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA