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The map label for this gene is ysgA [H]

Identifier: 29346221

GI number: 29346221

Start: 1002547

End: 1003305

Strand: Reverse

Name: ysgA [H]

Synonym: BT_0811

Alternate gene names: 29346221

Gene position: 1003305-1002547 (Counterclockwise)

Preceding gene: 29346225

Following gene: 29346215

Centisome position: 16.03

GC content: 44.93

Gene sequence:

>759_bases
ATGCTAAGCAAAAATAAAATAAAGTATATCCATTCACTGGAACTAAAGAAAACCCGTAAAGAGGAACAGGTATTCCTAGC
CGAAGGTCCTAAATTAACAGGCGATTTACTAGGACATTTCCCTTGCCGTTTTCTGGCTGCAACTTCTTCATGGTTACAAG
CGCATCCCGACATTCAAGCAAATGAAATTGCAGAAGTCTCTCAAGAAGAACTATCACGTGCCAGCCTGCTGAAAACACCA
CAGCAAGTACTTGCTGTTTTCGAGCAACCGCAATATACGTTAAGTCCGGATTTCGCACGCCAGTCTCTTTGCCTGGCACT
GGATGATATTCAGGACCCGGGGAACCTGGGTACGATTATCCGGCTGGCGGACTGGTTTGGTATCGAACATATTATCTGCT
CTCAGAACACGGTAGACGTATACAATCCCAAGACCATACAAGCCACTATGGGAGGAATCGCCCGTGTTAAGGTTCATTAC
ACCTCTCTTCCCGAATTTATTCATTCACTCGGTGATGCTCCTGTATTCGGAACATTTTTGGATGGAGAAAACATGTACGA
ACAACCATTATCCACCAACGGACTGATCGTAATGGGAAATGAAGGTAACGGAATAGGAAAAGAAGTGGAAGCACTCATCA
ATCGGAAACTTTATATCCCCAATTATCCACAAGGAAAAGAAACCTCGGAATCTCTCAACGTAGCTATCGCTACCGCAGTA
ATCTGTGCCGAGTTCCGGCGACAGGCTGCATGGAAGTAA

Upstream 100 bases:

>100_bases
TGTTAATATGAGAAAGAATTATTTTCAAAAAACTTGTTCAACAGCCGATTTATTAAAAATATATTTATAGCTTTGCGGTA
AATAAAGAAGTAAAAGAATA

Downstream 100 bases:

>100_bases
AATCAAAAGGATAAAATAAATAAGGAAACAGTACTTCTCCCCTCTTTGCAGACGCTGTAAGAGCCTCTTTAAAACATGGG
AAAGTTTGTCCCGAAACTAT

Product: putative tRNA/rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MLSKNKIKYIHSLELKKTRKEEQVFLAEGPKLTGDLLGHFPCRFLAATSSWLQAHPDIQANEIAEVSQEELSRASLLKTP
QQVLAVFEQPQYTLSPDFARQSLCLALDDIQDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGGIARVKVHY
TSLPEFIHSLGDAPVFGTFLDGENMYEQPLSTNGLIVMGNEGNGIGKEVEALINRKLYIPNYPQGKETSESLNVAIATAV
ICAEFRRQAAWK

Sequences:

>Translated_252_residues
MLSKNKIKYIHSLELKKTRKEEQVFLAEGPKLTGDLLGHFPCRFLAATSSWLQAHPDIQANEIAEVSQEELSRASLLKTP
QQVLAVFEQPQYTLSPDFARQSLCLALDDIQDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGGIARVKVHY
TSLPEFIHSLGDAPVFGTFLDGENMYEQPLSTNGLIVMGNEGNGIGKEVEALINRKLYIPNYPQGKETSESLNVAIATAV
ICAEFRRQAAWK
>Mature_252_residues
MLSKNKIKYIHSLELKKTRKEEQVFLAEGPKLTGDLLGHFPCRFLAATSSWLQAHPDIQANEIAEVSQEELSRASLLKTP
QQVLAVFEQPQYTLSPDFARQSLCLALDDIQDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGGIARVKVHY
TSLPEFIHSLGDAPVFGTFLDGENMYEQPLSTNGLIVMGNEGNGIGKEVEALINRKLYIPNYPQGKETSESLNVAIATAV
ICAEFRRQAAWK

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=162, Percent_Identity=29.0123456790123, Blast_Score=69, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27987; Mature: 27987

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSKNKIKYIHSLELKKTRKEEQVFLAEGPKLTGDLLGHFPCRFLAATSSWLQAHPDIQA
CCCCCHHHHHHHHHHHHHCCHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCH
NEIAEVSQEELSRASLLKTPQQVLAVFEQPQYTLSPDFARQSLCLALDDIQDPGNLGTII
HHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHH
RLADWFGIEHIICSQNTVDVYNPKTIQATMGGIARVKVHYTSLPEFIHSLGDAPVFGTFL
HHHHHHCCEEEEECCCEEECCCCCEEHHHHCCEEEEEEEEHHHHHHHHHHCCCCEEEEEE
DGENMYEQPLSTNGLIVMGNEGNGIGKEVEALINRKLYIPNYPQGKETSESLNVAIATAV
CCCCHHHCCCCCCCEEEECCCCCCCHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHH
ICAEFRRQAAWK
HHHHHHHHHCCC
>Mature Secondary Structure
MLSKNKIKYIHSLELKKTRKEEQVFLAEGPKLTGDLLGHFPCRFLAATSSWLQAHPDIQA
CCCCCHHHHHHHHHHHHHCCHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCH
NEIAEVSQEELSRASLLKTPQQVLAVFEQPQYTLSPDFARQSLCLALDDIQDPGNLGTII
HHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHH
RLADWFGIEHIICSQNTVDVYNPKTIQATMGGIARVKVHYTSLPEFIHSLGDAPVFGTFL
HHHHHHCCEEEEECCCEEECCCCCEEHHHHCCEEEEEEEEHHHHHHHHHHCCCCEEEEEE
DGENMYEQPLSTNGLIVMGNEGNGIGKEVEALINRKLYIPNYPQGKETSESLNVAIATAV
CCCCHHHCCCCCCCEEEECCCCCCCHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHH
ICAEFRRQAAWK
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]