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The map label for this gene is ntrY [H]

Identifier: 29346099

GI number: 29346099

Start: 856887

End: 858203

Strand: Reverse

Name: ntrY [H]

Synonym: BT_0689

Alternate gene names: 29346099

Gene position: 858203-856887 (Counterclockwise)

Preceding gene: 29346100

Following gene: 29346098

Centisome position: 13.71

GC content: 46.24

Gene sequence:

>1317_bases
ATGAACCGGATTCTACAACAAGTAGCCAACCAATATTGGTTCAGGGTATCACTGACGGTCATTTGCTGTCTGGCGACTAT
CTGTTTGGGCGTGCATCAGTCTTATGTCTGGTTCAGCGTCAGTGCCTGTCTGCTGATCTTAAGTATCATCTGGCAAGTCC
GGCTTTATCGCCTGCACATCAAGCAGGTGCTCTTCATGATCGATGCGTTGGAGAATAATGACAGTGCCTTCCGTTTCCCC
GAAGAGTCCGGTACTCCCGAGAGTAAACAGATCAATCGGGCACTCAATCGGGTGGGCCACATTTTATATAATGTAAAAGC
GGAGACTGCCCAACAGGAAAAGTACTACAAACTGATTCTTGACTTTGTCAGCACGGGACTGCTGGTGCTCAATGATAACG
GAGCGGTCTATCAGAAAAATAAAGAAGCACTCCGGCTTTTGGGACTGAATGTATTTACCCATGTCCGCCAGTTGAGTAAA
GTAGATGCTACACTGATGGAGAAGATAGAAAGTTGTTGTTCCGGAGATAAGCTGCAAGTGGTGTTTCACAATGAACGGGG
AACGGTCAATCTGTCTATTCGCGTGTCAGAAATCAATGTACACAAAGAACATCTGCGCATCCTTGCACTGAATGATATTA
ATATTGAGCTGGACGAAAAGGAGATAGATTCATGGATTCGCCTGACCCGAGTACTGACTCATGAGATCATGAACTCCGTG
ACTCCCATCACTTCGCTCAGCGATACGCTTCTCTCGATGGTGGAGGACAAAGACGAAGAGATCAGCCACGGACTGCAAAC
CATCAGTGCCACGGGAAAAGGGCTGCTTGCTTTCGTAGAATCCTACCGCAAATTCACACGGATACCGACTCCGGAACCTT
CATTGTTTTACTTGAAAGCATTCATCGAACGAATGGTGGAACTTGCCCGCCATCAGAATCCTTGTGACCACATCACGTTC
CATACAAAGATCGATCCTGCCGACCTGATCCTGCATGCAGATGAAAATCTGATTTCGCAAGTAGTCATAAATCTTCTGAA
AAATGCGATTCAGGCAATCGGTGATCAGCCGGACGGACAAATCGACATTCAGGTTTATTGCAACGAAACGGAAGAAGTGC
TGATTGAGATTAAGAATAACGGTCCCGTCATTCCACCGGAAATAGTGGAGCACATTTTTATCCCTTTCTTCACTACCAAA
GAAGGAGGCAGCGGAATCGGACTAAGTATTTCGCGTCAGATCATGCGGCTTTCGGGTGGAAGCCTCACGCTGTTACCGGA
CAACAAGGAAACGAAATTCATATTAAAATTCAAATAA

Upstream 100 bases:

>100_bases
GGAAAGCGCTGGATGCTTGTGCAGGAAATCTTTCGGCAGTAGCTGCGCAACTGGGAATTACCCGACAGACTCTCTATAAC
AAGATGAAAAAATTCGGATT

Downstream 100 bases:

>100_bases
CAGACCAGCCTATGACACCTGCACTCACCAATAACCCATTATTCCGGGGGATTACTCCGGAGAAGTTATCCGCCAATCTG
GAAGAGATCAGTTTCCACAC

Product: putative two-component system sensor histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 438; Mature: 438

Protein sequence:

>438_residues
MNRILQQVANQYWFRVSLTVICCLATICLGVHQSYVWFSVSACLLILSIIWQVRLYRLHIKQVLFMIDALENNDSAFRFP
EESGTPESKQINRALNRVGHILYNVKAETAQQEKYYKLILDFVSTGLLVLNDNGAVYQKNKEALRLLGLNVFTHVRQLSK
VDATLMEKIESCCSGDKLQVVFHNERGTVNLSIRVSEINVHKEHLRILALNDINIELDEKEIDSWIRLTRVLTHEIMNSV
TPITSLSDTLLSMVEDKDEEISHGLQTISATGKGLLAFVESYRKFTRIPTPEPSLFYLKAFIERMVELARHQNPCDHITF
HTKIDPADLILHADENLISQVVINLLKNAIQAIGDQPDGQIDIQVYCNETEEVLIEIKNNGPVIPPEIVEHIFIPFFTTK
EGGSGIGLSISRQIMRLSGGSLTLLPDNKETKFILKFK

Sequences:

>Translated_438_residues
MNRILQQVANQYWFRVSLTVICCLATICLGVHQSYVWFSVSACLLILSIIWQVRLYRLHIKQVLFMIDALENNDSAFRFP
EESGTPESKQINRALNRVGHILYNVKAETAQQEKYYKLILDFVSTGLLVLNDNGAVYQKNKEALRLLGLNVFTHVRQLSK
VDATLMEKIESCCSGDKLQVVFHNERGTVNLSIRVSEINVHKEHLRILALNDINIELDEKEIDSWIRLTRVLTHEIMNSV
TPITSLSDTLLSMVEDKDEEISHGLQTISATGKGLLAFVESYRKFTRIPTPEPSLFYLKAFIERMVELARHQNPCDHITF
HTKIDPADLILHADENLISQVVINLLKNAIQAIGDQPDGQIDIQVYCNETEEVLIEIKNNGPVIPPEIVEHIFIPFFTTK
EGGSGIGLSISRQIMRLSGGSLTLLPDNKETKFILKFK
>Mature_438_residues
MNRILQQVANQYWFRVSLTVICCLATICLGVHQSYVWFSVSACLLILSIIWQVRLYRLHIKQVLFMIDALENNDSAFRFP
EESGTPESKQINRALNRVGHILYNVKAETAQQEKYYKLILDFVSTGLLVLNDNGAVYQKNKEALRLLGLNVFTHVRQLSK
VDATLMEKIESCCSGDKLQVVFHNERGTVNLSIRVSEINVHKEHLRILALNDINIELDEKEIDSWIRLTRVLTHEIMNSV
TPITSLSDTLLSMVEDKDEEISHGLQTISATGKGLLAFVESYRKFTRIPTPEPSLFYLKAFIERMVELARHQNPCDHITF
HTKIDPADLILHADENLISQVVINLLKNAIQAIGDQPDGQIDIQVYCNETEEVLIEIKNNGPVIPPEIVEHIFIPFFTTK
EGGSGIGLSISRQIMRLSGGSLTLLPDNKETKFILKFK

Specific function: Member of the two-component regulatory system ntrY/ntrX involved in nitrogen level control. Probably activates ntrX by phosphorylation [H]

COG id: COG5000

COG function: function code T; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=363, Percent_Identity=24.7933884297521, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1790300, Length=148, Percent_Identity=31.0810810810811, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003660
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082
- InterPro:   IPR017232 [H]

Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 49779; Mature: 49779

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: PS50112 PAS ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRILQQVANQYWFRVSLTVICCLATICLGVHQSYVWFSVSACLLILSIIWQVRLYRLHI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQVLFMIDALENNDSAFRFPEESGTPESKQINRALNRVGHILYNVKAETAQQEKYYKLIL
HHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
DFVSTGLLVLNDNGAVYQKNKEALRLLGLNVFTHVRQLSKVDATLMEKIESCCSGDKLQV
HHHHCCEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
VFHNERGTVNLSIRVSEINVHKEHLRILALNDINIELDEKEIDSWIRLTRVLTHEIMNSV
EEECCCCEEEEEEEEEEEEEEHHHEEEEEEECCEEEECHHHHHHHHHHHHHHHHHHHHHC
TPITSLSDTLLSMVEDKDEEISHGLQTISATGKGLLAFVESYRKFTRIPTPEPSLFYLKA
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHH
FIERMVELARHQNPCDHITFHTKIDPADLILHADENLISQVVINLLKNAIQAIGDQPDGQ
HHHHHHHHHHCCCCCCCEEEEECCCHHHEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCE
IDIQVYCNETEEVLIEIKNNGPVIPPEIVEHIFIPFFTTKEGGSGIGLSISRQIMRLSGG
EEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHCEEEECCCCCCCCHHHHHHHHHHCCC
SLTLLPDNKETKFILKFK
EEEEEECCCCCEEEEEEC
>Mature Secondary Structure
MNRILQQVANQYWFRVSLTVICCLATICLGVHQSYVWFSVSACLLILSIIWQVRLYRLHI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQVLFMIDALENNDSAFRFPEESGTPESKQINRALNRVGHILYNVKAETAQQEKYYKLIL
HHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
DFVSTGLLVLNDNGAVYQKNKEALRLLGLNVFTHVRQLSKVDATLMEKIESCCSGDKLQV
HHHHCCEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
VFHNERGTVNLSIRVSEINVHKEHLRILALNDINIELDEKEIDSWIRLTRVLTHEIMNSV
EEECCCCEEEEEEEEEEEEEEHHHEEEEEEECCEEEECHHHHHHHHHHHHHHHHHHHHHC
TPITSLSDTLLSMVEDKDEEISHGLQTISATGKGLLAFVESYRKFTRIPTPEPSLFYLKA
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHH
FIERMVELARHQNPCDHITFHTKIDPADLILHADENLISQVVINLLKNAIQAIGDQPDGQ
HHHHHHHHHHCCCCCCCEEEEECCCHHHEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCE
IDIQVYCNETEEVLIEIKNNGPVIPPEIVEHIFIPFFTTKEGGSGIGLSISRQIMRLSGG
EEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHCEEEECCCCCCCCHHHHHHHHHHCCC
SLTLLPDNKETKFILKFK
EEEEEECCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]