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The map label for this gene is sodB [H]

Identifier: 29346065

GI number: 29346065

Start: 805970

End: 806551

Strand: Reverse

Name: sodB [H]

Synonym: BT_0655

Alternate gene names: 29346065

Gene position: 806551-805970 (Counterclockwise)

Preceding gene: 29346066

Following gene: 29346064

Centisome position: 12.88

GC content: 46.91

Gene sequence:

>582_bases
ATGACTTACGAAATGCCTAAACTTCCTTACGCAAACAATGCGCTGGAACCTGTAATCAGTCAGCAAACGATAGATTTCCA
TTACGGAAAACATCTGCAAACATATGTAAATAATCTGAATAGCCTTGTGCCCGGAACAGAATATGAAGGCAAAACGGTAG
AAGAAATCGTTGCCACCGCTCCCGATGGAGCTATCTTCAACAACGCCGGCCAAGTGCTGAATCACAATTTATATTTCCTC
CAATTCGCTCCGAAACCTTCGAAAAAGGAACCGGCAGGCAAACTGGGAGAAGCCATCAAACGTGATTTCGGCAGCTTTGA
AAACTTCAAGAAAGAATTCAATGCAGCAGCAGTCGGATTGTTCGGTTCAGGATGGGCCTGGCTGTCAGTAGACAAGAACG
GTAAACTGCATATCACCAAAGAAGGAAACGGCAGTAACCCTGTACGCGCCGGACTGAAACCACTTCTGGGTTTTGATGTG
TGGGAACACTCCTACTACCTGGACTACCAGAACCGCCGCGCCGACCACGTAAACGCCCTGTGGAACATCATCGACTGGGA
TGTGGTAGAAAAACGAATGTAA

Upstream 100 bases:

>100_bases
GTGAACCTTTTGCGAACTATGGCTGTTATTATAGTATAACAAAACCATTTAAAGTTTTGACAATATGAATACTATATTAA
TGTCTTTAATAATTATGACC

Downstream 100 bases:

>100_bases
CCGGACTCATTAAAATTAAGCTAAACTATACTATTGAAAAGGTCGTTGTGAATTTCACAGCGGCCTTTTTTCTAGCATAA
AAAACTAAACTATCTATTGT

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MTYEMPKLPYANNALEPVISQQTIDFHYGKHLQTYVNNLNSLVPGTEYEGKTVEEIVATAPDGAIFNNAGQVLNHNLYFL
QFAPKPSKKEPAGKLGEAIKRDFGSFENFKKEFNAAAVGLFGSGWAWLSVDKNGKLHITKEGNGSNPVRAGLKPLLGFDV
WEHSYYLDYQNRRADHVNALWNIIDWDVVEKRM

Sequences:

>Translated_193_residues
MTYEMPKLPYANNALEPVISQQTIDFHYGKHLQTYVNNLNSLVPGTEYEGKTVEEIVATAPDGAIFNNAGQVLNHNLYFL
QFAPKPSKKEPAGKLGEAIKRDFGSFENFKKEFNAAAVGLFGSGWAWLSVDKNGKLHITKEGNGSNPVRAGLKPLLGFDV
WEHSYYLDYQNRRADHVNALWNIIDWDVVEKRM
>Mature_192_residues
TYEMPKLPYANNALEPVISQQTIDFHYGKHLQTYVNNLNSLVPGTEYEGKTVEEIVATAPDGAIFNNAGQVLNHNLYFLQ
FAPKPSKKEPAGKLGEAIKRDFGSFENFKKEFNAAAVGLFGSGWAWLSVDKNGKLHITKEGNGSNPVRAGLKPLLGFDVW
EHSYYLDYQNRRADHVNALWNIIDWDVVEKRM

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=195, Percent_Identity=44.1025641025641, Blast_Score=152, Evalue=2e-37,
Organism=Homo sapiens, GI67782305, Length=195, Percent_Identity=44.1025641025641, Blast_Score=152, Evalue=2e-37,
Organism=Homo sapiens, GI67782309, Length=193, Percent_Identity=39.8963730569948, Blast_Score=128, Evalue=3e-30,
Organism=Escherichia coli, GI1787946, Length=193, Percent_Identity=48.7046632124352, Blast_Score=203, Evalue=6e-54,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=41.2621359223301, Blast_Score=155, Evalue=2e-39,
Organism=Caenorhabditis elegans, GI17506561, Length=194, Percent_Identity=40.7216494845361, Blast_Score=144, Evalue=2e-35,
Organism=Caenorhabditis elegans, GI17569479, Length=192, Percent_Identity=36.9791666666667, Blast_Score=134, Evalue=3e-32,
Organism=Saccharomyces cerevisiae, GI6321796, Length=204, Percent_Identity=34.8039215686275, Blast_Score=119, Evalue=2e-28,
Organism=Drosophila melanogaster, GI17136812, Length=196, Percent_Identity=40.8163265306122, Blast_Score=144, Evalue=5e-35,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21776; Mature: 21645

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYEMPKLPYANNALEPVISQQTIDFHYGKHLQTYVNNLNSLVPGTEYEGKTVEEIVATA
CCCCCCCCCCCCCCCCHHHCCCEECHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCC
PDGAIFNNAGQVLNHNLYFLQFAPKPSKKEPAGKLGEAIKRDFGSFENFKKEFNAAAVGL
CCCCEECCCCHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCHHEEEE
FGSGWAWLSVDKNGKLHITKEGNGSNPVRAGLKPLLGFDVWEHSYYLDYQNRRADHVNAL
ECCCEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHH
WNIIDWDVVEKRM
HHHHHHHHHHCCC
>Mature Secondary Structure 
TYEMPKLPYANNALEPVISQQTIDFHYGKHLQTYVNNLNSLVPGTEYEGKTVEEIVATA
CCCCCCCCCCCCCCCHHHCCCEECHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCC
PDGAIFNNAGQVLNHNLYFLQFAPKPSKKEPAGKLGEAIKRDFGSFENFKKEFNAAAVGL
CCCCEECCCCHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCHHEEEE
FGSGWAWLSVDKNGKLHITKEGNGSNPVRAGLKPLLGFDVWEHSYYLDYQNRRADHVNAL
ECCCEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHH
WNIIDWDVVEKRM
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA