| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
Click here to switch to the map view.
The map label for this gene is 29345935
Identifier: 29345935
GI number: 29345935
Start: 647028
End: 649490
Strand: Reverse
Name: 29345935
Synonym: BT_0525
Alternate gene names: NA
Gene position: 649490-647028 (Counterclockwise)
Preceding gene: 29345936
Following gene: 29345934
Centisome position: 10.37
GC content: 35.93
Gene sequence:
>2463_bases ATGATGAAAAAAACAATTCTGCTTACATCTATTATTGCGATAGCAATAGTAAGCATGTTATCCAGTTGCGTAGATTCCGA GAAGGATCTATATGATCCGTCTTATCAGACAGCCAATCCAATGGGAGACGGTTTTGCTGCACCGGATGGATTTGACTGGA ATATGACTACAACTAGTATTCTAAACATAGAAATTGATGATGAACTTTACAACCAAATAGAAATATTGGACGCAAATCCA TTTTCAACGTCTGATTACCATATACTTGCCAAAGGAGTTGCCAAGAAAGGTCAAGCTTTTTCACAAGAAATAAATTATAC AGAAGGAACTAATTACCTATATATTCGTAAGACAGACTCTAGAAGCAGAGTGTCTATTAGTACATGGGATGTATCTAAAA ATAAAGAATTTGTAGGTTCAAGGACTACAAGAGTTGCAAAAGCGACCATCGGAAGCTATAATATTCCAGAAAAATATCCC GAAGAAACTTATGATACCACAGGAGCTATTGAACTTACAGGTAATACTAATTGGAATCAATCAAATCATCATTTGGAAGC AGGCAAAAGCTATATCATAAAAAACAAATTTAATGGTGAAATCAACCATACCAGTGGATATTTGAATGGCGGAAGATTTA CCATATTTGTAGAAGGTGAATGGACACCCTCGCAAAACCAAATACAAAGTGCAGATATTATTATTTTGAAGGGTGGAAAA ATCAACACCGATTCATTCACGAGTTTTCTTATTGCTGACAACTCAATATTAACGATTCAATCAGGCGGAAGTCTTATTGG CAATAACATCAATCTTGCTGCCATAGGAGTATTACTGAAAAATTTTGGAACAATTAGTGTCAATAGTATGAAGGACTTGA ATACGACGTCTATTTTATACAATGCTCCTAAAGCCACAATTAATGTTACAGGAAAATCTGTTGCTTCTTGGGAACAGTCC GTATTTACCAAAGGAGCTATTTATAACTTTGGAGAATTGACTATTCAAGAAGGTGCATTAAAGTTTAATTCTCAAGATGC AACATGCTATTTTTATAATGGAACTGAAGCAACAATTAATACTCCAACTTTCATTATAGGTGGGATTGGTGTAAATGATG GAACTGTTAATGCTCAAAAAATAAGTAATGATAATGGCGGTAACCCTACTTTTACTAATAATTGCAGTCTTTATGCCCAA AATTCTTTCGAATTCGGAGGAACAAGCGGAACTATCATAATGAATAAAGGTATATTGGCTGGTGGCGTAGAAAATGGTAC TTTTATAGCTATTCCATCTTTTAAATGCGGTAATAGCGGAAGCACTTTTGAACTGAATAATGGTTCTATGATAAAAGCAG AGATAATGGATATTCCTAATGTCACTTTTAAAGCTGCCGGAACTCGTTCATTAATAAAATCCACAAAAAGCATATCTACT GGTTGGACAACTAAGTTCAATGGTAATTTGGATATTGAATGCCCGGAAGGGGAATTCGCCAAAGGGGTACCTGCCAATAA CCCTAATTACATTATGGAAAATTCAGTAGAATTATATATCCCGAATGGTTCCAAAACAATCATTACTTCATGTGGTGAAC TTTCAGAAATACCTGACCCTACCCCTGACCCGGAAGATCCTGAATTCCCTATTGAAGTGGAAGACAACAAAGATTATACT TACCTCTTCGAAGACCAATGGCCACTATATGGAGATTATGATATGAATGATATCGTTCTGACCATTCAGAAAAGGAAAAT ATATACTAATAAAGAGAATAAAGTAACAAAATTCGAGTTAAGTATTGACTTATCCGCAGCCGGAGCAACCAAAAGCATCG GAGCAGCTATTATGCTGGACAATGTACCCGCCAATGCCATTACACAGTCAGTTGAATTCAGTGACAATACTCTTGCCAAG AATTTCAATCTAAATAATAACAATATCGAAAGTGGTCAGGATTATGCTGTGATTCCTCTGTTTGATGATGCTCATAAAGT ATTGGGAAGAGATCGGTATGAGCAGATTAATACTGTCTCAGACTATGCAGGCAATACCAAACCTAAGAATATCAGTTTCT CCATTACCTTCAATAATCCGACAATATCAGCAGATGCTTTTAATGTCAACAATTTGAATGTCTTTATCATCGTAGACGGC AACAGAAACCCACGTAAGGAAATACATGTTGCAGGCTATCAACCAACCAAACTCGCAAACACCGATCTGTTTGGCGGAAA CAACGATAACAGTCATCATGGCAGCAAAAAATATTATATCAGTAAAGAGAATCTGGCATGGGGTATCATGGTTCCTTCCA ATTTCAAATGGCCTTTAGAGTATGTAAATATCAAAACTGCTTATTCACAATTCAGCGACTGGGTAACGAGCGGTGGTACA GAAAATGAAAAATGGTGGAATGATTTTGATGTAAACAAGGTATTCCAAACAAATAAAAACTAA
Upstream 100 bases:
>100_bases TCGTTGCTTTTTACACAAGAAATATCAATAAATACATCTTTAATCCAAAATATACAACTATCTTTGCAGCAAACAAAAAA ACAATCAAACAATAGACATT
Downstream 100 bases:
>100_bases TCTCCCTTATCAACACGGATTTCATAAAAAAAATGAAATCCGTGTTTTTTTCCTCACTAAATGTATCAGATATATTCTAT TAATAAATAAAAATAATAAT
Product: outer membrane protein, function unknown
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 820; Mature: 820
Protein sequence:
>820_residues MMKKTILLTSIIAIAIVSMLSSCVDSEKDLYDPSYQTANPMGDGFAAPDGFDWNMTTTSILNIEIDDELYNQIEILDANP FSTSDYHILAKGVAKKGQAFSQEINYTEGTNYLYIRKTDSRSRVSISTWDVSKNKEFVGSRTTRVAKATIGSYNIPEKYP EETYDTTGAIELTGNTNWNQSNHHLEAGKSYIIKNKFNGEINHTSGYLNGGRFTIFVEGEWTPSQNQIQSADIIILKGGK INTDSFTSFLIADNSILTIQSGGSLIGNNINLAAIGVLLKNFGTISVNSMKDLNTTSILYNAPKATINVTGKSVASWEQS VFTKGAIYNFGELTIQEGALKFNSQDATCYFYNGTEATINTPTFIIGGIGVNDGTVNAQKISNDNGGNPTFTNNCSLYAQ NSFEFGGTSGTIIMNKGILAGGVENGTFIAIPSFKCGNSGSTFELNNGSMIKAEIMDIPNVTFKAAGTRSLIKSTKSIST GWTTKFNGNLDIECPEGEFAKGVPANNPNYIMENSVELYIPNGSKTIITSCGELSEIPDPTPDPEDPEFPIEVEDNKDYT YLFEDQWPLYGDYDMNDIVLTIQKRKIYTNKENKVTKFELSIDLSAAGATKSIGAAIMLDNVPANAITQSVEFSDNTLAK NFNLNNNNIESGQDYAVIPLFDDAHKVLGRDRYEQINTVSDYAGNTKPKNISFSITFNNPTISADAFNVNNLNVFIIVDG NRNPRKEIHVAGYQPTKLANTDLFGGNNDNSHHGSKKYYISKENLAWGIMVPSNFKWPLEYVNIKTAYSQFSDWVTSGGT ENEKWWNDFDVNKVFQTNKN
Sequences:
>Translated_820_residues MMKKTILLTSIIAIAIVSMLSSCVDSEKDLYDPSYQTANPMGDGFAAPDGFDWNMTTTSILNIEIDDELYNQIEILDANP FSTSDYHILAKGVAKKGQAFSQEINYTEGTNYLYIRKTDSRSRVSISTWDVSKNKEFVGSRTTRVAKATIGSYNIPEKYP EETYDTTGAIELTGNTNWNQSNHHLEAGKSYIIKNKFNGEINHTSGYLNGGRFTIFVEGEWTPSQNQIQSADIIILKGGK INTDSFTSFLIADNSILTIQSGGSLIGNNINLAAIGVLLKNFGTISVNSMKDLNTTSILYNAPKATINVTGKSVASWEQS VFTKGAIYNFGELTIQEGALKFNSQDATCYFYNGTEATINTPTFIIGGIGVNDGTVNAQKISNDNGGNPTFTNNCSLYAQ NSFEFGGTSGTIIMNKGILAGGVENGTFIAIPSFKCGNSGSTFELNNGSMIKAEIMDIPNVTFKAAGTRSLIKSTKSIST GWTTKFNGNLDIECPEGEFAKGVPANNPNYIMENSVELYIPNGSKTIITSCGELSEIPDPTPDPEDPEFPIEVEDNKDYT YLFEDQWPLYGDYDMNDIVLTIQKRKIYTNKENKVTKFELSIDLSAAGATKSIGAAIMLDNVPANAITQSVEFSDNTLAK NFNLNNNNIESGQDYAVIPLFDDAHKVLGRDRYEQINTVSDYAGNTKPKNISFSITFNNPTISADAFNVNNLNVFIIVDG NRNPRKEIHVAGYQPTKLANTDLFGGNNDNSHHGSKKYYISKENLAWGIMVPSNFKWPLEYVNIKTAYSQFSDWVTSGGT ENEKWWNDFDVNKVFQTNKN >Mature_820_residues MMKKTILLTSIIAIAIVSMLSSCVDSEKDLYDPSYQTANPMGDGFAAPDGFDWNMTTTSILNIEIDDELYNQIEILDANP FSTSDYHILAKGVAKKGQAFSQEINYTEGTNYLYIRKTDSRSRVSISTWDVSKNKEFVGSRTTRVAKATIGSYNIPEKYP EETYDTTGAIELTGNTNWNQSNHHLEAGKSYIIKNKFNGEINHTSGYLNGGRFTIFVEGEWTPSQNQIQSADIIILKGGK INTDSFTSFLIADNSILTIQSGGSLIGNNINLAAIGVLLKNFGTISVNSMKDLNTTSILYNAPKATINVTGKSVASWEQS VFTKGAIYNFGELTIQEGALKFNSQDATCYFYNGTEATINTPTFIIGGIGVNDGTVNAQKISNDNGGNPTFTNNCSLYAQ NSFEFGGTSGTIIMNKGILAGGVENGTFIAIPSFKCGNSGSTFELNNGSMIKAEIMDIPNVTFKAAGTRSLIKSTKSIST GWTTKFNGNLDIECPEGEFAKGVPANNPNYIMENSVELYIPNGSKTIITSCGELSEIPDPTPDPEDPEFPIEVEDNKDYT YLFEDQWPLYGDYDMNDIVLTIQKRKIYTNKENKVTKFELSIDLSAAGATKSIGAAIMLDNVPANAITQSVEFSDNTLAK NFNLNNNNIESGQDYAVIPLFDDAHKVLGRDRYEQINTVSDYAGNTKPKNISFSITFNNPTISADAFNVNNLNVFIIVDG NRNPRKEIHVAGYQPTKLANTDLFGGNNDNSHHGSKKYYISKENLAWGIMVPSNFKWPLEYVNIKTAYSQFSDWVTSGGT ENEKWWNDFDVNKVFQTNKN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 90201; Mature: 90201
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMKKTILLTSIIAIAIVSMLSSCVDSEKDLYDPSYQTANPMGDGFAAPDGFDWNMTTTSI CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE LNIEIDDELYNQIEILDANPFSTSDYHILAKGVAKKGQAFSQEINYTEGTNYLYIRKTDS EEEEECHHHCCEEEEEECCCCCCCCEEEEEECHHHCCCHHHHHCCCCCCCCEEEEEECCC RSRVSISTWDVSKNKEFVGSRTTRVAKATIGSYNIPEKYPEETYDTTGAIELTGNTNWNQ CCEEEEEEEECCCCCHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCC SNHHLEAGKSYIIKNKFNGEINHTSGYLNGGRFTIFVEGEWTPSQNQIQSADIIILKGGK CCCEECCCCEEEEEECCCCEEECCCCEECCCEEEEEEEECCCCCCCCCCCCCEEEEECCE INTDSFTSFLIADNSILTIQSGGSLIGNNINLAAIGVLLKNFGTISVNSMKDLNTTSILY ECCCCCEEEEEECCCEEEEECCCCEECCCCCHHHHHHHHHCCCEEEECCCCCCCCEEEEE NAPKATINVTGKSVASWEQSVFTKGAIYNFGELTIQEGALKFNSQDATCYFYNGTEATIN ECCCEEEEECCCCHHHHHHHHHCCCCEEECCEEEEECCEEEECCCCCEEEEECCCEEEEC TPTFIIGGIGVNDGTVNAQKISNDNGGNPTFTNNCSLYAQNSFEFGGTSGTIIMNKGILA CCEEEEEEEECCCCCCCCEEECCCCCCCCCCCCCEEEEECCCEECCCCCCEEEEECCEEE GGVENGTFIAIPSFKCGNSGSTFELNNGSMIKAEIMDIPNVTFKAAGTRSLIKSTKSIST CCCCCCEEEEECCEEECCCCCEEEECCCCEEEEEEECCCCCEEECCCCHHHHHHHHCCCC GWTTKFNGNLDIECPEGEFAKGVPANNPNYIMENSVELYIPNGSKTIITSCGELSEIPDP CCEEEECCCEEEECCCCCCCCCCCCCCCCEEEECCEEEEECCCCEEEEEECCCHHCCCCC TPDPEDPEFPIEVEDNKDYTYLFEDQWPLYGDYDMNDIVLTIQKRKIYTNKENKVTKFEL CCCCCCCCCCEEEECCCCEEEEECCCCCEECCCCCCEEEEEEEEEEEEECCCCCEEEEEE SIDLSAAGATKSIGAAIMLDNVPANAITQSVEFSDNTLAKNFNLNNNNIESGQDYAVIPL EEEEECCCCCCCCCEEEEECCCCHHHHHEEEECCCCEEEEEECCCCCCCCCCCCEEEEEE FDDAHKVLGRDRYEQINTVSDYAGNTKPKNISFSITFNNPTISADAFNVNNLNVFIIVDG ECCHHHHHCCHHHHHHCCHHHHCCCCCCCEEEEEEEECCCEEEEEEEECCCEEEEEEEEC NRNPRKEIHVAGYQPTKLANTDLFGGNNDNSHHGSKKYYISKENLAWGIMVPSNFKWPLE CCCCCCEEEEECCCCCCCCCCEECCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCEE YVNIKTAYSQFSDWVTSGGTENEKWWNDFDVNKVFQTNKN EEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCC >Mature Secondary Structure MMKKTILLTSIIAIAIVSMLSSCVDSEKDLYDPSYQTANPMGDGFAAPDGFDWNMTTTSI CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE LNIEIDDELYNQIEILDANPFSTSDYHILAKGVAKKGQAFSQEINYTEGTNYLYIRKTDS EEEEECHHHCCEEEEEECCCCCCCCEEEEEECHHHCCCHHHHHCCCCCCCCEEEEEECCC RSRVSISTWDVSKNKEFVGSRTTRVAKATIGSYNIPEKYPEETYDTTGAIELTGNTNWNQ CCEEEEEEEECCCCCHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCC SNHHLEAGKSYIIKNKFNGEINHTSGYLNGGRFTIFVEGEWTPSQNQIQSADIIILKGGK CCCEECCCCEEEEEECCCCEEECCCCEECCCEEEEEEEECCCCCCCCCCCCCEEEEECCE INTDSFTSFLIADNSILTIQSGGSLIGNNINLAAIGVLLKNFGTISVNSMKDLNTTSILY ECCCCCEEEEEECCCEEEEECCCCEECCCCCHHHHHHHHHCCCEEEECCCCCCCCEEEEE NAPKATINVTGKSVASWEQSVFTKGAIYNFGELTIQEGALKFNSQDATCYFYNGTEATIN ECCCEEEEECCCCHHHHHHHHHCCCCEEECCEEEEECCEEEECCCCCEEEEECCCEEEEC TPTFIIGGIGVNDGTVNAQKISNDNGGNPTFTNNCSLYAQNSFEFGGTSGTIIMNKGILA CCEEEEEEEECCCCCCCCEEECCCCCCCCCCCCCEEEEECCCEECCCCCCEEEEECCEEE GGVENGTFIAIPSFKCGNSGSTFELNNGSMIKAEIMDIPNVTFKAAGTRSLIKSTKSIST CCCCCCEEEEECCEEECCCCCEEEECCCCEEEEEEECCCCCEEECCCCHHHHHHHHCCCC GWTTKFNGNLDIECPEGEFAKGVPANNPNYIMENSVELYIPNGSKTIITSCGELSEIPDP CCEEEECCCEEEECCCCCCCCCCCCCCCCEEEECCEEEEECCCCEEEEEECCCHHCCCCC TPDPEDPEFPIEVEDNKDYTYLFEDQWPLYGDYDMNDIVLTIQKRKIYTNKENKVTKFEL CCCCCCCCCCEEEECCCCEEEEECCCCCEECCCCCCEEEEEEEEEEEEECCCCCEEEEEE SIDLSAAGATKSIGAAIMLDNVPANAITQSVEFSDNTLAKNFNLNNNNIESGQDYAVIPL EEEEECCCCCCCCCEEEEECCCCHHHHHEEEECCCCEEEEEECCCCCCCCCCCCEEEEEE FDDAHKVLGRDRYEQINTVSDYAGNTKPKNISFSITFNNPTISADAFNVNNLNVFIIVDG ECCHHHHHCCHHHHHHCCHHHHCCCCCCCEEEEEEEECCCEEEEEEEECCCEEEEEEEEC NRNPRKEIHVAGYQPTKLANTDLFGGNNDNSHHGSKKYYISKENLAWGIMVPSNFKWPLE CCCCCCEEEEECCCCCCCCCCEECCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCEE YVNIKTAYSQFSDWVTSGGTENEKWWNDFDVNKVFQTNKN EEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA