| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29345667
Identifier: 29345667
GI number: 29345667
Start: 285198
End: 288110
Strand: Reverse
Name: 29345667
Synonym: BT_0257
Alternate gene names: NA
Gene position: 288110-285198 (Counterclockwise)
Preceding gene: 29345668
Following gene: 29345666
Centisome position: 4.6
GC content: 45.66
Gene sequence:
>2913_bases ATGAAAAAAATAATAGTCTTTCTTCTGTGCCTGACAATGGGCACCAGTCTTCTCTTCGCTCAGGACATTGAGAGAAATAT AAAAGAGCGGTTAACGGATTACTTTGCCAAATACACAGCGACAGCTAAAATCAGTACACCGAAACTGAACAGTTTCGATA TTGATTATGACCGCAGAACCATTCAGATTTATGCTTCGGAAAGCTTCGCCTACCAGCCCTTTCTGCCGGAAACGGTAGAA ACCATCTACAATCAGATGAAAGAACTGCTCCCCGGTCCGGTAAACTATTATCAGATCACCATTTATGCAGATGGAAAGCC CATTGAAGAATTAGTTCCCAACTTGTACAGAAGCAAGAAAAAGGATAAAGAACGAATGGCGCTGAACACCGAATACAAAG GTGCTCCATGGGTGAAAAACACTTCCCGCCCCAATGAGATATCCCGAGGATTGCAGGACCGGCATATTGCCCTCTGGCAA AGTCACGGTAATTATTATAAGAATGACAAAGGCGAATGGGGATGGCAGCGCCCCCGATTATTCTGCACCACAGAAGATAT GTTCACTCAATCCTTCATTCTTCCATACGTCATTCCGATGTTGGAAAATGCCGGTGCCATTGTGTATACTCCTCGCGAAC GGGACACACAAAAGAATGAAATCATTGTTGACAACGATACTCCGAATGCTTCCCTTTATTTGGAAGTAGGCAGTAAGAAA GCACGCTGGACGACTACTTCCGTGAAAGGATTCGCCCAGAAAAAAGCCATTTACAAAGATGGGGAAAACCCTTTCACTGA CGGTACCAGCCGGTATATTCAAACAGAAAAGAAAAAAAAGAAGAATAAGGATCAGGCTTTTGCCGAATGGGTACCTACCC TGCCGGCAACCGGAAAATATGCGGTCTATGTTTCATATCAGACACTACCCAATAGCGTGAGCGATGCCAAATACCTCGTC TTTCATAATGGGGGTGTCACGGAATTTAAGGTCAATCAAAAAATAGGCGGCGGTACTTGGGTATATCTCGGAACTTTTGA GTTTGACAAAGGAAATAATGACTACGGCATGGTTGTACTGAGTAATGAAAGTAGCGAGCATGGCGTAGTGTGTGCAGATG CCGTACGCTTCGGAGGAGGAATGGGTAATATCTCACGCGGAGGAAAAATAAGCGGACTCCCCCGTTATCTGGAAGGAGCA CGATATTCATCCCAGTGGGCCGGTATGCCATACGATGTATATGCCGGGCGTAAAGGAGAAAACGATTATACAGACGATAT CAATACACGTTCCAATACAATCAACTATCTGTCGGGAGGCTCTGTCTATAATCCGGGACAAACGGGTTTAGGTGTACCTC TGGAAATGACTATGGCACTTCATAGTGACGCTGGATGCAGTAAAGACGATGAAATCATCGGTTCGCTCGGCATCTATACC ACCGATTTCAATAATGGCAAACTAAATTCGGGAATGGACAGATATGCTTCACGTGATCTTGCGGATATCCTGCTGACTCA AATTCAGAAAGATATTCGTACGAACTACAATCTACCATGGACACGCCGCAGTATGTGGAACCGGAATTACAGTGAAACAC GACTTCCTGCTACTCCTTCCACGATTATCGAATTGCTCTCTCATCAGAACTTTGCAGATATGCAGCTTGGTCATAATCCG AATTTCAAGTTTACCGTAGGACGTGCTATCTACAAAGGTATCCTGCAATTTATAAACAGTCAGCATGGCAAAGACTATGT AGTGCAACCTCTTCCGGTCAGCAACTTCGCTATCCATTTCGGAAAAAAGAAAAACACACTGGAACTTACCTGGAAAGGGG AAGACGATCCGCTGGAACCGACAGCCCGTCCACGGGAATATATGGTATATACACGCATCGGATACGGAGGATTCGACAAC GGAACTCTGGTCAGCAAACCCTATTACAGTGTCAAAGTAGAACCGGGACTTGTCTATTCGTTCAAAGTGACAGCCGTAAA CCGGGGAGGAGAAAGTTTTCCTTCTGAAATCCTTTCGGCTTATAAGGCAAAACGTGAACGAGAGAGAATCTTGATTATCA ATGGATTCGACAGAATCAGCGGTCCGGCTGTCATTAACACACCGGACAAAGCCGGATTTGATCTGGAACAGGATCCGGGA GTGCCTTATTTATCCAATATCTCTTTTTGCGGGGCACAAAGCGGATTCAACCGTTCACAAGCTGGAAAAGAAGGAGAAGG CAGCCTGGGACATAGCGGCAGAGAGCTGGAAGGCATGGAGATAGCAGGAAATACGTTTGATTATCCTTTCATTCATGGGA AAGCCATTCAGGCAGCAGGGAAATACAGCTTTGTCTCGTGCAGCGACGAAGCGGTAGAGAATGGAATCGTCACTTTAGAA GATTACCCGATCGTAGACTATATACTCGGACTTGAAAAGGAAGACCCGATAGCCAAAGCATATTACAAAACATTCTCTTC ACCGATGCAAAGACTGATTACAAGCTATTGCCAGTCAGGAGGTCATTTGTTCGTCAGCGGTGCGTATGTGGGAAGTGACA TGAGCGGAACACAAGGGAACCGGGAGTTTACAGAGAAAGTTTTGAAATACGGTTATCAGAACAGTCTGACAGACAAAAGT TCCGGTCAAATCAATGGATTAGGACGCAGCATCACGATCCCCCGCCTGCCCAATGAGACCAGTTATGCTGTTACGGCACC GGACTGCATCGTTCCGGTAGCTCCCGCATTTCCAGTATTTACTTATGCACGTGGCAATCAGTCGGCAGGCATTGCTTACA AAGGAGCAGACTATCGCACCTTCGTACTCGGCTTTCCTTTCGAAAGCATTCAGTCGGAAACAGATCGCGCCAGCATTATG GCCGGGATACTAGGTTTCTTTACTCAGAAATAA
Upstream 100 bases:
>100_bases GCGAGATTCATTTCGTATTCTCCTTCCAAAAGGGGAAATGCCATCAAGGGGAAAGTGGCGGACATAGATAATCATAGGAT GCAACCTAAAGAGTGGAACG
Downstream 100 bases:
>100_bases AGTACTCACGGATATAAGATTTATTTTCTGAAAGCCCGGATAAAAATATCCGGGCTTTTTTAATTCGTTTTTCATTTTAA ATTCTATCTTTGCTCCTAGT
Product: xanthan lyase
Products: NA
Alternate protein names: Xanthan Lyase; N-Acetylmuramoyl-L-Alanine Amidase; Exported Xanthan Lyase/N-Acetylmuramoyl-L-Alanine Amidase; Fibronectin Type IIIi Domain Protein
Number of amino acids: Translated: 970; Mature: 970
Protein sequence:
>970_residues MKKIIVFLLCLTMGTSLLFAQDIERNIKERLTDYFAKYTATAKISTPKLNSFDIDYDRRTIQIYASESFAYQPFLPETVE TIYNQMKELLPGPVNYYQITIYADGKPIEELVPNLYRSKKKDKERMALNTEYKGAPWVKNTSRPNEISRGLQDRHIALWQ SHGNYYKNDKGEWGWQRPRLFCTTEDMFTQSFILPYVIPMLENAGAIVYTPRERDTQKNEIIVDNDTPNASLYLEVGSKK ARWTTTSVKGFAQKKAIYKDGENPFTDGTSRYIQTEKKKKKNKDQAFAEWVPTLPATGKYAVYVSYQTLPNSVSDAKYLV FHNGGVTEFKVNQKIGGGTWVYLGTFEFDKGNNDYGMVVLSNESSEHGVVCADAVRFGGGMGNISRGGKISGLPRYLEGA RYSSQWAGMPYDVYAGRKGENDYTDDINTRSNTINYLSGGSVYNPGQTGLGVPLEMTMALHSDAGCSKDDEIIGSLGIYT TDFNNGKLNSGMDRYASRDLADILLTQIQKDIRTNYNLPWTRRSMWNRNYSETRLPATPSTIIELLSHQNFADMQLGHNP NFKFTVGRAIYKGILQFINSQHGKDYVVQPLPVSNFAIHFGKKKNTLELTWKGEDDPLEPTARPREYMVYTRIGYGGFDN GTLVSKPYYSVKVEPGLVYSFKVTAVNRGGESFPSEILSAYKAKRERERILIINGFDRISGPAVINTPDKAGFDLEQDPG VPYLSNISFCGAQSGFNRSQAGKEGEGSLGHSGRELEGMEIAGNTFDYPFIHGKAIQAAGKYSFVSCSDEAVENGIVTLE DYPIVDYILGLEKEDPIAKAYYKTFSSPMQRLITSYCQSGGHLFVSGAYVGSDMSGTQGNREFTEKVLKYGYQNSLTDKS SGQINGLGRSITIPRLPNETSYAVTAPDCIVPVAPAFPVFTYARGNQSAGIAYKGADYRTFVLGFPFESIQSETDRASIM AGILGFFTQK
Sequences:
>Translated_970_residues MKKIIVFLLCLTMGTSLLFAQDIERNIKERLTDYFAKYTATAKISTPKLNSFDIDYDRRTIQIYASESFAYQPFLPETVE TIYNQMKELLPGPVNYYQITIYADGKPIEELVPNLYRSKKKDKERMALNTEYKGAPWVKNTSRPNEISRGLQDRHIALWQ SHGNYYKNDKGEWGWQRPRLFCTTEDMFTQSFILPYVIPMLENAGAIVYTPRERDTQKNEIIVDNDTPNASLYLEVGSKK ARWTTTSVKGFAQKKAIYKDGENPFTDGTSRYIQTEKKKKKNKDQAFAEWVPTLPATGKYAVYVSYQTLPNSVSDAKYLV FHNGGVTEFKVNQKIGGGTWVYLGTFEFDKGNNDYGMVVLSNESSEHGVVCADAVRFGGGMGNISRGGKISGLPRYLEGA RYSSQWAGMPYDVYAGRKGENDYTDDINTRSNTINYLSGGSVYNPGQTGLGVPLEMTMALHSDAGCSKDDEIIGSLGIYT TDFNNGKLNSGMDRYASRDLADILLTQIQKDIRTNYNLPWTRRSMWNRNYSETRLPATPSTIIELLSHQNFADMQLGHNP NFKFTVGRAIYKGILQFINSQHGKDYVVQPLPVSNFAIHFGKKKNTLELTWKGEDDPLEPTARPREYMVYTRIGYGGFDN GTLVSKPYYSVKVEPGLVYSFKVTAVNRGGESFPSEILSAYKAKRERERILIINGFDRISGPAVINTPDKAGFDLEQDPG VPYLSNISFCGAQSGFNRSQAGKEGEGSLGHSGRELEGMEIAGNTFDYPFIHGKAIQAAGKYSFVSCSDEAVENGIVTLE DYPIVDYILGLEKEDPIAKAYYKTFSSPMQRLITSYCQSGGHLFVSGAYVGSDMSGTQGNREFTEKVLKYGYQNSLTDKS SGQINGLGRSITIPRLPNETSYAVTAPDCIVPVAPAFPVFTYARGNQSAGIAYKGADYRTFVLGFPFESIQSETDRASIM AGILGFFTQK >Mature_970_residues MKKIIVFLLCLTMGTSLLFAQDIERNIKERLTDYFAKYTATAKISTPKLNSFDIDYDRRTIQIYASESFAYQPFLPETVE TIYNQMKELLPGPVNYYQITIYADGKPIEELVPNLYRSKKKDKERMALNTEYKGAPWVKNTSRPNEISRGLQDRHIALWQ SHGNYYKNDKGEWGWQRPRLFCTTEDMFTQSFILPYVIPMLENAGAIVYTPRERDTQKNEIIVDNDTPNASLYLEVGSKK ARWTTTSVKGFAQKKAIYKDGENPFTDGTSRYIQTEKKKKKNKDQAFAEWVPTLPATGKYAVYVSYQTLPNSVSDAKYLV FHNGGVTEFKVNQKIGGGTWVYLGTFEFDKGNNDYGMVVLSNESSEHGVVCADAVRFGGGMGNISRGGKISGLPRYLEGA RYSSQWAGMPYDVYAGRKGENDYTDDINTRSNTINYLSGGSVYNPGQTGLGVPLEMTMALHSDAGCSKDDEIIGSLGIYT TDFNNGKLNSGMDRYASRDLADILLTQIQKDIRTNYNLPWTRRSMWNRNYSETRLPATPSTIIELLSHQNFADMQLGHNP NFKFTVGRAIYKGILQFINSQHGKDYVVQPLPVSNFAIHFGKKKNTLELTWKGEDDPLEPTARPREYMVYTRIGYGGFDN GTLVSKPYYSVKVEPGLVYSFKVTAVNRGGESFPSEILSAYKAKRERERILIINGFDRISGPAVINTPDKAGFDLEQDPG VPYLSNISFCGAQSGFNRSQAGKEGEGSLGHSGRELEGMEIAGNTFDYPFIHGKAIQAAGKYSFVSCSDEAVENGIVTLE DYPIVDYILGLEKEDPIAKAYYKTFSSPMQRLITSYCQSGGHLFVSGAYVGSDMSGTQGNREFTEKVLKYGYQNSLTDKS SGQINGLGRSITIPRLPNETSYAVTAPDCIVPVAPAFPVFTYARGNQSAGIAYKGADYRTFVLGFPFESIQSETDRASIM AGILGFFTQK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 108391; Mature: 108391
Theoretical pI: Translated: 8.11; Mature: 8.11
Prosite motif: PS50853 FN3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIIVFLLCLTMGTSLLFAQDIERNIKERLTDYFAKYTATAKISTPKLNSFDIDYDRRT CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCEECCCCCEE IQIYASESFAYQPFLPETVETIYNQMKELLPGPVNYYQITIYADGKPIEELVPNLYRSKK EEEEECCCEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHH KDKERMALNTEYKGAPWVKNTSRPNEISRGLQDRHIALWQSHGNYYKNDKGEWGWQRPRL CCHHHHEECCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEE FCTTEDMFTQSFILPYVIPMLENAGAIVYTPRERDTQKNEIIVDNDTPNASLYLEVGSKK EEECHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCCCEEEEEECCCC ARWTTTSVKGFAQKKAIYKDGENPFTDGTSRYIQTEKKKKKNKDQAFAEWVPTLPATGKY CEEEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCE AVYVSYQTLPNSVSDAKYLVFHNGGVTEFKVNQKIGGGTWVYLGTFEFDKGNNDYGMVVL EEEEEEECCCCCCCCCEEEEEECCCCEEEEECCCCCCCEEEEEEEEEECCCCCCEEEEEE SNESSEHGVVCADAVRFGGGMGNISRGGKISGLPRYLEGARYSSQWAGMPYDVYAGRKGE CCCCCCCCEEEEHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEECCCCCC NDYTDDINTRSNTINYLSGGSVYNPGQTGLGVPLEMTMALHSDAGCSKDDEIIGSLGIYT CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHEECCEEE TDFNNGKLNSGMDRYASRDLADILLTQIQKDIRTNYNLPWTRRSMWNRNYSETRLPATPS EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCHH TIIELLSHQNFADMQLGHNPNFKFTVGRAIYKGILQFINSQHGKDYVVQPLPVSNFAIHF HHHHHHHCCCCCCEECCCCCCEEEEHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEE GKKKNTLELTWKGEDDPLEPTARPREYMVYTRIGYGGFDNGTLVSKPYYSVKVEPGLVYS CCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCEEEEEECCCEEEE FKVTAVNRGGESFPSEILSAYKAKRERERILIINGFDRISGPAVINTPDKAGFDLEQDPG EEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCC VPYLSNISFCGAQSGFNRSQAGKEGEGSLGHSGRELEGMEIAGNTFDYPFIHGKAIQAAG CCHHCCCEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCEECCCC KYSFVSCSDEAVENGIVTLEDYPIVDYILGLEKEDPIAKAYYKTFSSPMQRLITSYCQSG CEEEEECCHHHHHCCEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC GHLFVSGAYVGSDMSGTQGNREFTEKVLKYGYQNSLTDKSSGQINGLGRSITIPRLPNET CEEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEECCCCEEECCCCCCCC SYAVTAPDCIVPVAPAFPVFTYARGNQSAGIAYKGADYRTFVLGFPFESIQSETDRASIM CEEEECCCCEEECCCCCCEEEEECCCCCCCEEEECCCEEEEEEECCHHHHHCHHHHHHHH AGILGFFTQK HHHHHHHCCC >Mature Secondary Structure MKKIIVFLLCLTMGTSLLFAQDIERNIKERLTDYFAKYTATAKISTPKLNSFDIDYDRRT CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCEECCCCCEE IQIYASESFAYQPFLPETVETIYNQMKELLPGPVNYYQITIYADGKPIEELVPNLYRSKK EEEEECCCEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHH KDKERMALNTEYKGAPWVKNTSRPNEISRGLQDRHIALWQSHGNYYKNDKGEWGWQRPRL CCHHHHEECCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEE FCTTEDMFTQSFILPYVIPMLENAGAIVYTPRERDTQKNEIIVDNDTPNASLYLEVGSKK EEECHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCCCEEEEEECCCC ARWTTTSVKGFAQKKAIYKDGENPFTDGTSRYIQTEKKKKKNKDQAFAEWVPTLPATGKY CEEEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCE AVYVSYQTLPNSVSDAKYLVFHNGGVTEFKVNQKIGGGTWVYLGTFEFDKGNNDYGMVVL EEEEEEECCCCCCCCCEEEEEECCCCEEEEECCCCCCCEEEEEEEEEECCCCCCEEEEEE SNESSEHGVVCADAVRFGGGMGNISRGGKISGLPRYLEGARYSSQWAGMPYDVYAGRKGE CCCCCCCCEEEEHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEECCCCCC NDYTDDINTRSNTINYLSGGSVYNPGQTGLGVPLEMTMALHSDAGCSKDDEIIGSLGIYT CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHEECCEEE TDFNNGKLNSGMDRYASRDLADILLTQIQKDIRTNYNLPWTRRSMWNRNYSETRLPATPS EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCHH TIIELLSHQNFADMQLGHNPNFKFTVGRAIYKGILQFINSQHGKDYVVQPLPVSNFAIHF HHHHHHHCCCCCCEECCCCCCEEEEHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEE GKKKNTLELTWKGEDDPLEPTARPREYMVYTRIGYGGFDNGTLVSKPYYSVKVEPGLVYS CCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCEEEEEECCCEEEE FKVTAVNRGGESFPSEILSAYKAKRERERILIINGFDRISGPAVINTPDKAGFDLEQDPG EEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCC VPYLSNISFCGAQSGFNRSQAGKEGEGSLGHSGRELEGMEIAGNTFDYPFIHGKAIQAAG CCHHCCCEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCEECCCC KYSFVSCSDEAVENGIVTLEDYPIVDYILGLEKEDPIAKAYYKTFSSPMQRLITSYCQSG CEEEEECCHHHHHCCEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC GHLFVSGAYVGSDMSGTQGNREFTEKVLKYGYQNSLTDKSSGQINGLGRSITIPRLPNET CEEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEECCCCEEECCCCCCCC SYAVTAPDCIVPVAPAFPVFTYARGNQSAGIAYKGADYRTFVLGFPFESIQSETDRASIM CEEEECCCCEEECCCCCCEEEEECCCCCCCEEEECCCEEEEEEECCHHHHHCHHHHHHHH AGILGFFTQK HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA