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The map label for this gene is rpoE [C]

Identifier: 29345658

GI number: 29345658

Start: 273972

End: 274481

Strand: Reverse

Name: rpoE [C]

Synonym: BT_0248

Alternate gene names: 29345658

Gene position: 274481-273972 (Counterclockwise)

Preceding gene: 29345659

Following gene: 29345657

Centisome position: 4.38

GC content: 42.94

Gene sequence:

>510_bases
ATGAGAGAACGAACAATAGAGGCAACCAACCCTATTGAACAGGAGTTCTTATCGGTCATCCGCGAATATGAACGGGTGAT
CTACAAGGTATGTTACTTATATACCAATCCTAACGCCCCGCTCAATGACCTCTATCAGGATGTGATACTCAACCTCTGGA
AAGCCTATCCCAAGTTCAGAAGAGAATGCAAAATGTCCACATGGATTTACCGCATCGCCCTGAACACGTGTATCAGCTTT
TTCCGCAAAGAAAAGAATGTACCGGAAATCGTTACCCTCACCCGCGAAGCGGACTGGATAATAGAGGAACATGACCCGAT
CCACGAAATGCTGAGGCAACTTTATCAAATGATCAATCAACTGGGACAACTCGACAAATCAATTATCCTGCTTTATCTTG
AAGATAAAAGTTACGAAGATATTGCGGAGATCACCGGACTGACGGTGACAAATGTGGCTACCAAACTGAGCCGTATCAAA
GACAAACTAAAAAAAATGAAAAAGGAGTAA

Upstream 100 bases:

>100_bases
GCGAAAATTCCTGGCTGCCAATCTGCAATAACTTTCGTTTACTTGTGATTTTTCTCCTTTTCGCACGACTAACTAACCAG
AAAAGTAACCCATTTAATTC

Downstream 100 bases:

>100_bases
TCATATATGGAACTGGAAGAACTGAAAAAATCATGGAATGCCCTGGATGAGCACTTAAAAGATAAGGAGCTGATCAAAGA
GGAAGAACTTGGCAAACTGA

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor RpoE; ECF Family RNA Polymerase Sigma-70 Factor; Sigma-; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-24 Factor; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma; RNA Polymerase Sigma Factor SigW; RNA Polymerase Ecf-Type Sigma Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase; DNA-Directed RNA Polymeracialized Sigma Subunit

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MRERTIEATNPIEQEFLSVIREYERVIYKVCYLYTNPNAPLNDLYQDVILNLWKAYPKFRRECKMSTWIYRIALNTCISF
FRKEKNVPEIVTLTREADWIIEEHDPIHEMLRQLYQMINQLGQLDKSIILLYLEDKSYEDIAEITGLTVTNVATKLSRIK
DKLKKMKKE

Sequences:

>Translated_169_residues
MRERTIEATNPIEQEFLSVIREYERVIYKVCYLYTNPNAPLNDLYQDVILNLWKAYPKFRRECKMSTWIYRIALNTCISF
FRKEKNVPEIVTLTREADWIIEEHDPIHEMLRQLYQMINQLGQLDKSIILLYLEDKSYEDIAEITGLTVTNVATKLSRIK
DKLKKMKKE
>Mature_169_residues
MRERTIEATNPIEQEFLSVIREYERVIYKVCYLYTNPNAPLNDLYQDVILNLWKAYPKFRRECKMSTWIYRIALNTCISF
FRKEKNVPEIVTLTREADWIIEEHDPIHEMLRQLYQMINQLGQLDKSIILLYLEDKSYEDIAEITGLTVTNVATKLSRIK
DKLKKMKKE

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20285; Mature: 20285

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: PS00622 HTH_LUXR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRERTIEATNPIEQEFLSVIREYERVIYKVCYLYTNPNAPLNDLYQDVILNLWKAYPKFR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
RECKMSTWIYRIALNTCISFFRKEKNVPEIVTLTREADWIIEEHDPIHEMLRQLYQMINQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHH
LGQLDKSIILLYLEDKSYEDIAEITGLTVTNVATKLSRIKDKLKKMKKE
HHCCCHHEEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRERTIEATNPIEQEFLSVIREYERVIYKVCYLYTNPNAPLNDLYQDVILNLWKAYPKFR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
RECKMSTWIYRIALNTCISFFRKEKNVPEIVTLTREADWIIEEHDPIHEMLRQLYQMINQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHH
LGQLDKSIILLYLEDKSYEDIAEITGLTVTNVATKLSRIKDKLKKMKKE
HHCCCHHEEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA