| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29345581
Identifier: 29345581
GI number: 29345581
Start: 179107
End: 180390
Strand: Reverse
Name: 29345581
Synonym: BT_0171
Alternate gene names: NA
Gene position: 180390-179107 (Counterclockwise)
Preceding gene: 29345582
Following gene: 29345580
Centisome position: 2.88
GC content: 32.79
Gene sequence:
>1284_bases ATGAAAATTGTATATAACACTATTCTCTTTACATTACTATTTCTAGCCACAAGCTGTGATCATTCGGAGAAAATCGATGA TATAAAACTTGAAATTTCACAAAACATCTTCCGCAACATCGACAATAACGGAGGGAAAATAACTGTTGCTATCACATCTA ATTCTGAATGGATCATCGCAAATTCAGCTGATTGGTGCATACCAGACAAATATCAAGGAGAAGGAAACGATATACTTACT ATAAAAATTCTAGCTAACACCAAACATGCAAACAGACAAACTAATCTAATCATATCCGCCCAAGGGATAAACCAAACAAT CAAGATTTCACAACAAAAAGGAGAAGTTAATCCAGATTTAGATAAAATACACTATCAATTACCCGTTATTTTCCATGTTC TTTATCAAAACGAAAATGACATAAATCAATATATAAAAGAAGACCATTTAAAAGATGTATTAGTGCGAACTAACCATTTC TATCAATCTGAAAAGTGTGGAATTGATATAAATCTCGAATTTGTATTAGCAACCAAAGATAAGAATGGAACCACACTACC AGAACCTGGAGTAGAAAGAGTGCCATTTAATGAGCTTCCTATTGATTGCGAAAAGTTTATGAGAGATAATACAGGAAAAT ATACATCTTTACTATGGGAACCCAATGAATACATTAACATAATGGTATATCCTTTTACGGATTCGCAGATTTTAGGCATA TCTACATTTCCATATAGTTTAAAGGACTTTTTTTTAGAAGGGACTCAACAAGTATCAGCTTCGTGGATCACTTTAGAGAA TTTGAGTTTCCCATATTGTATATCGATCAATAGTTCATATATTTATGAGCAAAGTACAGATGAAAGAATTAATCAAAACG ATGCTGCAATAACATTAGCACACGAACTCGGACACTATTTAGGATTACGTCATGTATTCTCAGAAGGAGGGACCACTTCA ATGTGTACCGATACTGATTATTGCAAAGATACTCCCAGTTATAACCGTAGTGAGTATGAACAATGGCTTAACAATTTGGA TAAACAGAATAAATATCAATTAAAAGATTTAGCTAAACGATATAGCTGTGAAAAAGGAGAATATGAAGCACACAACATTA TGGACTATGCATATTGCTTTTATAATGAAATAACTTTAGAACAACGAAAAAGAATACGCCATATCTTAAACTATAGCCCA CTGATTCCAGGTCCCAAAGAAAGCAGAATAGATACCAGAGGCGTACAAGACAGATTGAATTTGCCAATATGTATAATGAA ATAA
Upstream 100 bases:
>100_bases TACAGTAAAAGTAGAAATTCAGTAAAGGTTACAAATATCCCAAAGCCGTAATTTCCCTTTTCTTGAAAATGAGAAATTAC GGCTTTTATAAATAAAAGCT
Downstream 100 bases:
>100_bases CATAATCAGGTAAAACGGGGCAGCAAGTATTTCATCGACTGTTCCTCCATAGTAGTCAAATGTCAGAACAAGTCTTGACT ATTACAACTAATTATCCGTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 427; Mature: 427
Protein sequence:
>427_residues MKIVYNTILFTLLFLATSCDHSEKIDDIKLEISQNIFRNIDNNGGKITVAITSNSEWIIANSADWCIPDKYQGEGNDILT IKILANTKHANRQTNLIISAQGINQTIKISQQKGEVNPDLDKIHYQLPVIFHVLYQNENDINQYIKEDHLKDVLVRTNHF YQSEKCGIDINLEFVLATKDKNGTTLPEPGVERVPFNELPIDCEKFMRDNTGKYTSLLWEPNEYINIMVYPFTDSQILGI STFPYSLKDFFLEGTQQVSASWITLENLSFPYCISINSSYIYEQSTDERINQNDAAITLAHELGHYLGLRHVFSEGGTTS MCTDTDYCKDTPSYNRSEYEQWLNNLDKQNKYQLKDLAKRYSCEKGEYEAHNIMDYAYCFYNEITLEQRKRIRHILNYSP LIPGPKESRIDTRGVQDRLNLPICIMK
Sequences:
>Translated_427_residues MKIVYNTILFTLLFLATSCDHSEKIDDIKLEISQNIFRNIDNNGGKITVAITSNSEWIIANSADWCIPDKYQGEGNDILT IKILANTKHANRQTNLIISAQGINQTIKISQQKGEVNPDLDKIHYQLPVIFHVLYQNENDINQYIKEDHLKDVLVRTNHF YQSEKCGIDINLEFVLATKDKNGTTLPEPGVERVPFNELPIDCEKFMRDNTGKYTSLLWEPNEYINIMVYPFTDSQILGI STFPYSLKDFFLEGTQQVSASWITLENLSFPYCISINSSYIYEQSTDERINQNDAAITLAHELGHYLGLRHVFSEGGTTS MCTDTDYCKDTPSYNRSEYEQWLNNLDKQNKYQLKDLAKRYSCEKGEYEAHNIMDYAYCFYNEITLEQRKRIRHILNYSP LIPGPKESRIDTRGVQDRLNLPICIMK >Mature_427_residues MKIVYNTILFTLLFLATSCDHSEKIDDIKLEISQNIFRNIDNNGGKITVAITSNSEWIIANSADWCIPDKYQGEGNDILT IKILANTKHANRQTNLIISAQGINQTIKISQQKGEVNPDLDKIHYQLPVIFHVLYQNENDINQYIKEDHLKDVLVRTNHF YQSEKCGIDINLEFVLATKDKNGTTLPEPGVERVPFNELPIDCEKFMRDNTGKYTSLLWEPNEYINIMVYPFTDSQILGI STFPYSLKDFFLEGTQQVSASWITLENLSFPYCISINSSYIYEQSTDERINQNDAAITLAHELGHYLGLRHVFSEGGTTS MCTDTDYCKDTPSYNRSEYEQWLNNLDKQNKYQLKDLAKRYSCEKGEYEAHNIMDYAYCFYNEITLEQRKRIRHILNYSP LIPGPKESRIDTRGVQDRLNLPICIMK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49408; Mature: 49408
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIVYNTILFTLLFLATSCDHSEKIDDIKLEISQNIFRNIDNNGGKITVAITSNSEWIIA CEEEHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHCCCCCCEEEEEEECCCCEEEE NSADWCIPDKYQGEGNDILTIKILANTKHANRQTNLIISAQGINQTIKISQQKGEVNPDL CCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCH DKIHYQLPVIFHVLYQNENDINQYIKEDHLKDVLVRTNHFYQSEKCGIDINLEFVLATKD HHHEEHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEC KNGTTLPEPGVERVPFNELPIDCEKFMRDNTGKYTSLLWEPNEYINIMVYPFTDSQILGI CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCCCEEEEEEEECCCCEEEEE STFPYSLKDFFLEGTQQVSASWITLENLSFPYCISINSSYIYEQSTDERINQNDAAITLA EECCHHHHHHHHCCCHHHCEEEEEEECCCCCEEEEECCCEEEECCCHHHCCCCCCEEEEH HELGHYLGLRHVFSEGGTTSMCTDTDYCKDTPSYNRSEYEQWLNNLDKQNKYQLKDLAKR HHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH YSCEKGEYEAHNIMDYAYCFYNEITLEQRKRIRHILNYSPLIPGPKESRIDTRGVQDRLN HCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCC LPICIMK CCEEEEC >Mature Secondary Structure MKIVYNTILFTLLFLATSCDHSEKIDDIKLEISQNIFRNIDNNGGKITVAITSNSEWIIA CEEEHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHCCCCCCEEEEEEECCCCEEEE NSADWCIPDKYQGEGNDILTIKILANTKHANRQTNLIISAQGINQTIKISQQKGEVNPDL CCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCH DKIHYQLPVIFHVLYQNENDINQYIKEDHLKDVLVRTNHFYQSEKCGIDINLEFVLATKD HHHEEHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEC KNGTTLPEPGVERVPFNELPIDCEKFMRDNTGKYTSLLWEPNEYINIMVYPFTDSQILGI CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCCCEEEEEEEECCCCEEEEE STFPYSLKDFFLEGTQQVSASWITLENLSFPYCISINSSYIYEQSTDERINQNDAAITLA EECCHHHHHHHHCCCHHHCEEEEEEECCCCCEEEEECCCEEEECCCHHHCCCCCCEEEEH HELGHYLGLRHVFSEGGTTSMCTDTDYCKDTPSYNRSEYEQWLNNLDKQNKYQLKDLAKR HHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH YSCEKGEYEAHNIMDYAYCFYNEITLEQRKRIRHILNYSPLIPGPKESRIDTRGVQDRLN HCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCC LPICIMK CCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA