| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29345499
Identifier: 29345499
GI number: 29345499
Start: 82736
End: 83359
Strand: Reverse
Name: 29345499
Synonym: BT_0089
Alternate gene names: NA
Gene position: 83359-82736 (Counterclockwise)
Preceding gene: 29345500
Following gene: 29345498
Centisome position: 1.33
GC content: 45.83
Gene sequence:
>624_bases ATGGAATTTAAAAGTTTAAAGAACATTGAAACCAGTTTCAAACAGATACGTCTTTTCGGGATTGTGTTTGTCGTTATGTG TACCCTGATAACGGGGTATGCCGTTTGGAACTCCTACACGTTTGCCGAAGCGCAACGGCAAAAGATTTATGTGCTGGACG GTGGCAAATCGTTGATGCTTGCGCTTTCGCAAGACCTGACACAAAACCGTCCGGTCGAAGCAAGGGAACACGTGAAGCGT TTTCACGAACTCTTTTTCACGCTCTCACCGGATAAGAACGCTATCGAAAGCAATATCAAACGGTCGCTGTTCCTCGACGA CAAGAGCGCATTTAACTATTACCGTGACCTCTCGGAAAAGGGATATTACAACCGTATCATTTCGGGCAATATCAGCCAGA CCATACAGATAGACAGCGTTTCATGCAATTTCGATGTGTACCCGTATGCGGTGGCTACCTATGCCCGCCAAATGATTATC CGTGAAAGCAGCGTGACGGAAAGAAGCCTTGTCACCCGTTGCCGGTTATTAAACGCCGTAAGAAGTGATAATAACCCGCA CGGCTTTATGATGGAAAGTTTCGAGATAACGGAAAACAAGGACTTGAACACCATAAAGCGGTAA
Upstream 100 bases:
>100_bases GGGCAGTGGCGTTGGTGCGGTAGCCGGAGCAGCCACCGGGAACGCTGGCGGCAGGGTCGGCGGTAAACTAATCAAAGGTA ATCAATAATTAAAAATCAAG
Downstream 100 bases:
>100_bases GCCATGATACGGAAAATTCTCTCTCCGGTGAATCAGGCAATTACCCATGTGCAGGACTGGGCGGATGAAAAACTCCGCCG CCTGTGCGGGCGCATGACAC
Product: conjugate transposon protein
Products: NA
Alternate protein names: Plasmid Transfer Protein; F Pilus Assembly Protein TraK; Conjugate Transposon Protein; Conjugate Transposon Protein TraK; Transposon TraK Protein; Conserved Protein Found In Conjugate Transposon TraK
Number of amino acids: Translated: 207; Mature: 207
Protein sequence:
>207_residues MEFKSLKNIETSFKQIRLFGIVFVVMCTLITGYAVWNSYTFAEAQRQKIYVLDGGKSLMLALSQDLTQNRPVEAREHVKR FHELFFTLSPDKNAIESNIKRSLFLDDKSAFNYYRDLSEKGYYNRIISGNISQTIQIDSVSCNFDVYPYAVATYARQMII RESSVTERSLVTRCRLLNAVRSDNNPHGFMMESFEITENKDLNTIKR
Sequences:
>Translated_207_residues MEFKSLKNIETSFKQIRLFGIVFVVMCTLITGYAVWNSYTFAEAQRQKIYVLDGGKSLMLALSQDLTQNRPVEAREHVKR FHELFFTLSPDKNAIESNIKRSLFLDDKSAFNYYRDLSEKGYYNRIISGNISQTIQIDSVSCNFDVYPYAVATYARQMII RESSVTERSLVTRCRLLNAVRSDNNPHGFMMESFEITENKDLNTIKR >Mature_207_residues MEFKSLKNIETSFKQIRLFGIVFVVMCTLITGYAVWNSYTFAEAQRQKIYVLDGGKSLMLALSQDLTQNRPVEAREHVKR FHELFFTLSPDKNAIESNIKRSLFLDDKSAFNYYRDLSEKGYYNRIISGNISQTIQIDSVSCNFDVYPYAVATYARQMII RESSVTERSLVTRCRLLNAVRSDNNPHGFMMESFEITENKDLNTIKR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24051; Mature: 24051
Theoretical pI: Translated: 9.02; Mature: 9.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEFKSLKNIETSFKQIRLFGIVFVVMCTLITGYAVWNSYTFAEAQRQKIYVLDGGKSLML CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEEECCCCEEH ALSQDLTQNRPVEAREHVKRFHELFFTLSPDKNAIESNIKRSLFLDDKSAFNYYRDLSEK HHHHHHHCCCCCHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHEECCHHHHHHHHHHHCC GYYNRIISGNISQTIQIDSVSCNFDVYPYAVATYARQMIIRESSVTERSLVTRCRLLNAV CCHHHEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH RSDNNPHGFMMESFEITENKDLNTIKR HCCCCCCCEEEEEEECCCCCCCHHHCC >Mature Secondary Structure MEFKSLKNIETSFKQIRLFGIVFVVMCTLITGYAVWNSYTFAEAQRQKIYVLDGGKSLML CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEEECCCCEEH ALSQDLTQNRPVEAREHVKRFHELFFTLSPDKNAIESNIKRSLFLDDKSAFNYYRDLSEK HHHHHHHCCCCCHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHEECCHHHHHHHHHHHCC GYYNRIISGNISQTIQIDSVSCNFDVYPYAVATYARQMIIRESSVTERSLVTRCRLLNAV CCHHHEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH RSDNNPHGFMMESFEITENKDLNTIKR HCCCCCCCEEEEEEECCCCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA