Click here to switch to the map view.

The map label for this gene is yafM [H]

Identifier: 29144844

GI number: 29144844

Start: 4765555

End: 4766040

Strand: Direct

Name: yafM [H]

Synonym: t4614

Alternate gene names: 29144844

Gene position: 4765555-4766040 (Clockwise)

Preceding gene: 29144843

Following gene: 29144847

Centisome position: 99.45

GC content: 48.56

Gene sequence:

>486_bases
ATGTCGAACTATCGTCGTTATTACATTAACGGTGGAACCTGGTTTTTCACGGTTAATCTGAAAAACCGGAAAAGTGATTT
ACTTGTCCGCCAGATTGCGGAATTACGCTCTGCGATTCGCCGAGTGAAAAATACGAAGCCTTTTCAAATTGATGCTTTTG
TCGTGTTGCCTGAGCATCTGCATTGCATCTGGACGCTTCCTGAGAACGATTGTGACTTTTCATCTCGCTGGCGGGAGCTT
AAAAAGTTATTTACCAAATCGATAATGCGCCATGACGTGTGGCAGCCACGATTCTGGGAGCACACGATTCGCGACGAAAA
GGATTTTCGCCGACATGTCGATTACCTCTACTTCAACCCCGTGAAGCACGGTTGGGTAAGGCGGGTGCAGGATTGGCCGT
TTTCGACCTTTCATCGTGATGTTCGCAATGGCGTTTACCCGGTTGATTGGGCGGGGGAGGTGAGGGATCTTGACGCTGGT
GAATAG

Upstream 100 bases:

>100_bases
CTGCTGTTTATACTGCGAGCCTCATTCCCGAATTACCCTCTCCGCATTGCCTTTTGCTATTAACCCGTTACGTTTGGATT
TTGTTTAAGGAATGAACAAA

Downstream 100 bases:

>100_bases
CGGTAATGCCGGATGGCGCGTTGCTTATCCGGCCTACAGAAAGCACTCATTTGTAGGCCGGATAAGGCGTAGCCGCCATC
CGGCAATTCTTTAACGCACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MSNYRRYYINGGTWFFTVNLKNRKSDLLVRQIAELRSAIRRVKNTKPFQIDAFVVLPEHLHCIWTLPENDCDFSSRWREL
KKLFTKSIMRHDVWQPRFWEHTIRDEKDFRRHVDYLYFNPVKHGWVRRVQDWPFSTFHRDVRNGVYPVDWAGEVRDLDAG
E

Sequences:

>Translated_161_residues
MSNYRRYYINGGTWFFTVNLKNRKSDLLVRQIAELRSAIRRVKNTKPFQIDAFVVLPEHLHCIWTLPENDCDFSSRWREL
KKLFTKSIMRHDVWQPRFWEHTIRDEKDFRRHVDYLYFNPVKHGWVRRVQDWPFSTFHRDVRNGVYPVDWAGEVRDLDAG
E
>Mature_160_residues
SNYRRYYINGGTWFFTVNLKNRKSDLLVRQIAELRSAIRRVKNTKPFQIDAFVVLPEHLHCIWTLPENDCDFSSRWRELK
KLFTKSIMRHDVWQPRFWEHTIRDEKDFRRHVDYLYFNPVKHGWVRRVQDWPFSTFHRDVRNGVYPVDWAGEVRDLDAGE

Specific function: Unknown

COG id: COG1943

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0217 [H]

Homologues:

Organism=Escherichia coli, GI1786422, Length=161, Percent_Identity=68.944099378882, Blast_Score=244, Evalue=2e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19730; Mature: 19598

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNYRRYYINGGTWFFTVNLKNRKSDLLVRQIAELRSAIRRVKNTKPFQIDAFVVLPEHL
CCCCEEEEECCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCE
HCIWTLPENDCDFSSRWRELKKLFTKSIMRHDVWQPRFWEHTIRDEKDFRRHVDYLYFNP
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHEEECC
VKHGWVRRVQDWPFSTFHRDVRNGVYPVDWAGEVRDLDAGE
HHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SNYRRYYINGGTWFFTVNLKNRKSDLLVRQIAELRSAIRRVKNTKPFQIDAFVVLPEHL
CCCEEEEECCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCE
HCIWTLPENDCDFSSRWRELKKLFTKSIMRHDVWQPRFWEHTIRDEKDFRRHVDYLYFNP
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHEEECC
VKHGWVRRVQDWPFSTFHRDVRNGVYPVDWAGEVRDLDAGE
HHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7596361; 9278503 [H]