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The map label for this gene is slmA [H]

Identifier: 29144066

GI number: 29144066

Start: 3907915

End: 3908511

Strand: Reverse

Name: slmA [H]

Synonym: t3786

Alternate gene names: 29144066

Gene position: 3908511-3907915 (Counterclockwise)

Preceding gene: 29144067

Following gene: 29144063

Centisome position: 81.56

GC content: 51.76

Gene sequence:

>597_bases
ATGGCAGAAAAACAAACTGCGAAAAGGAATCGTCGCGAAGAAATACTTCAGTCACTGGCGCTGATGCTTGAATCCAGCGA
TGGAAGCCAACGCATCACGACGGCAAAACTGGCGGCCTCGGTCGGCGTTTCCGAAGCGGCGCTATACCGCCATTTTCCCA
GCAAGACCCGCATGTTCGATAGCCTGATTGAGTTTATCGAAGATAGTCTGATTACCCGTATCAATCTGATTTTAAAAGAT
GAAAAAGACACCAGCACGCGTTTGCGCCTGATTGTGTTACTGATTCTGGGTTTTGGCGAACGCAACCCTGGCCTGACGCG
CATTCTTACCGGGCATGCGCTGATGTTTGAACAGGATCGCCTGCAGGGGCGCATTAATCAGCTTTTTGAACGCATCGAAG
CGCAGCTCCGCCAGGTGCTACGAGAAAAAAGAATGCGTGAAGGCGAAGGCTACACGACGGATAAAAATCTGCTGGCAAGC
CAGCTGTTAGCCTTCTGTGAAGGTATGCTTTCACGGTTCGTGCGTAGCGAATTTAAATACCGCCCAACGGACGATTTCGA
CGCCCGCTGGCCGCTCATTGCCGCGCAGTTGCAGTAA

Upstream 100 bases:

>100_bases
GCATCCCCATAACGTCATAATACTGCCGCAAGCGCTGAGTTTGCGGTTATAGCGTGGGTGCTCGCCTGGCAAGTGCTTAT
TTTCAGGGGTATTTTGTAAC

Downstream 100 bases:

>100_bases
CGCTGACTGGATAGTGGCTCACGCCTTATCCAGGCGACAGAAATATAGGCCCGGTAAAGCGCCACCGGGCAATTCGCTTA
CACGCCAAATTCTTCCCGGT

Product: nucleoid occlusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MAEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKD
EKDTSTRLRLIVLLILGFGERNPGLTRILTGHALMFEQDRLQGRINQLFERIEAQLRQVLREKRMREGEGYTTDKNLLAS
QLLAFCEGMLSRFVRSEFKYRPTDDFDARWPLIAAQLQ

Sequences:

>Translated_198_residues
MAEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKD
EKDTSTRLRLIVLLILGFGERNPGLTRILTGHALMFEQDRLQGRINQLFERIEAQLRQVLREKRMREGEGYTTDKNLLAS
QLLAFCEGMLSRFVRSEFKYRPTDDFDARWPLIAAQLQ
>Mature_197_residues
AEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDE
KDTSTRLRLIVLLILGFGERNPGLTRILTGHALMFEQDRLQGRINQLFERIEAQLRQVLREKRMREGEGYTTDKNLLASQ
LLAFCEGMLSRFVRSEFKYRPTDDFDARWPLIAAQLQ

Specific function: Required for nucleoid occlusion (NO) phenomenon, which cooperates in the proper positioning of the ftsZ/septal ring at midcell during cell division. Acts as a DNA-associated division inhibitor directly involved in preventing Z ring assembly on portions of

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082302, Length=198, Percent_Identity=96.969696969697, Blast_Score=370, Evalue=1e-104,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22865; Mature: 22734

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFD
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHCCHHHHHHH
SLIEFIEDSLITRINLILKDEKDTSTRLRLIVLLILGFGERNPGLTRILTGHALMFEQDR
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
LQGRINQLFERIEAQLRQVLREKRMREGEGYTTDKNLLASQLLAFCEGMLSRFVRSEFKY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
RPTDDFDARWPLIAAQLQ
CCCCCCCCCCCCHHCCCC
>Mature Secondary Structure 
AEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFD
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHCCHHHHHHH
SLIEFIEDSLITRINLILKDEKDTSTRLRLIVLLILGFGERNPGLTRILTGHALMFEQDR
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
LQGRINQLFERIEAQLRQVLREKRMREGEGYTTDKNLLASQLLAFCEGMLSRFVRSEFKY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
RPTDDFDARWPLIAAQLQ
CCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA