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The map label for this gene is yihW [H]

Identifier: 29143897

GI number: 29143897

Start: 3694433

End: 3695236

Strand: Reverse

Name: yihW [H]

Synonym: t3596

Alternate gene names: 29143897

Gene position: 3695236-3694433 (Counterclockwise)

Preceding gene: 29143898

Following gene: 29143896

Centisome position: 77.11

GC content: 54.23

Gene sequence:

>804_bases
ATGAGTCTTACCGAACTGACCGGTAATCCGCGACACGATCGGCTGTTAATGCTTATTGATGAGCGCGGCTATATGAATAT
CGATGAGTTAGCCAGTTTGTTGGAGGTCTCTACCCAGACGGTTCGCCGCGATATTCGTAAATTAAGCGAGCAGGGGCTGA
TTACGCGTCATCACGGCGGCGCTGGCAGAGCGTCCAGTGTGGTCAATACCGCCTTTGAGCAGCGAGAGATCTCCTGGACG
CAAGAGAAAAAAGCCATTGCGGAAGCCGTGGCTGACTATATTCCGGATGGCTCCACGATATTTATCACGATTGGAACGAC
GGTTGAGCAGGTGGCGCGCGCGCTGCTCAACCATAATCATCTGCGCATTATCACCAATAGCCTGCGCGTCGCGCACATTC
TTTATAATAACCCTCGCTTTGAAGTGATGGTGCCTGGCGGCACGCTGCGCCCGCATAATAGCGGCATTATCGGGCCATCC
GCGGCGGCGTTTGTGGCGGGGTTCCGGGCGGACTATCTCGTCACCAGCGTAGGCGCGATAGAGAGCGATGGCGCGTTACT
GGAGTTTGATGTCAACGAAGCCAGCGTAGTGAAAACCATGATGGCTCACTCGCGACATATTCTGCTGGCCGCCGATCATA
CGAAATACCATGCTTCTGCGGCGGTTGAGATCGGCAATGTGTCACAGATTACCGCTCTGTTTACGGACGAGTATCCCGGT
CCGGCATTACAGAATTTACTTCAATCCCAGCAAATCGAAGTGGTTCAGGTGAGTCCTTCGCTGGACGACGCCGTTTCAGC
GTGA

Upstream 100 bases:

>100_bases
CCCGGGTGGCCGGGCGGGTATCCCTGATTGTGAGCAAACCCGATCTTTCTTGTCACTTTTTGTATAATATGAGCAGTAGG
AAGCTTTTAGAGGAATGCTC

Downstream 100 bases:

>100_bases
CAAGCGCCCTTGCGCCGGAGGGTCGCGTCAGCGCTTTATCCGGCCAATAAAACGGCGCTGTGATGCAGGCGATATTGGGC
ATCGTCTGCGTTTCTATTGT

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MSLTELTGNPRHDRLLMLIDERGYMNIDELASLLEVSTQTVRRDIRKLSEQGLITRHHGGAGRASSVVNTAFEQREISWT
QEKKAIAEAVADYIPDGSTIFITIGTTVEQVARALLNHNHLRIITNSLRVAHILYNNPRFEVMVPGGTLRPHNSGIIGPS
AAAFVAGFRADYLVTSVGAIESDGALLEFDVNEASVVKTMMAHSRHILLAADHTKYHASAAVEIGNVSQITALFTDEYPG
PALQNLLQSQQIEVVQVSPSLDDAVSA

Sequences:

>Translated_267_residues
MSLTELTGNPRHDRLLMLIDERGYMNIDELASLLEVSTQTVRRDIRKLSEQGLITRHHGGAGRASSVVNTAFEQREISWT
QEKKAIAEAVADYIPDGSTIFITIGTTVEQVARALLNHNHLRIITNSLRVAHILYNNPRFEVMVPGGTLRPHNSGIIGPS
AAAFVAGFRADYLVTSVGAIESDGALLEFDVNEASVVKTMMAHSRHILLAADHTKYHASAAVEIGNVSQITALFTDEYPG
PALQNLLQSQQIEVVQVSPSLDDAVSA
>Mature_266_residues
SLTELTGNPRHDRLLMLIDERGYMNIDELASLLEVSTQTVRRDIRKLSEQGLITRHHGGAGRASSVVNTAFEQREISWTQ
EKKAIAEAVADYIPDGSTIFITIGTTVEQVARALLNHNHLRIITNSLRVAHILYNNPRFEVMVPGGTLRPHNSGIIGPSA
AAFVAGFRADYLVTSVGAIESDGALLEFDVNEASVVKTMMAHSRHILLAADHTKYHASAAVEIGNVSQITALFTDEYPGP
ALQNLLQSQQIEVVQVSPSLDDAVSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082344, Length=255, Percent_Identity=88.6274509803922, Blast_Score=465, Evalue=1e-132,
Organism=Escherichia coli, GI1789829, Length=244, Percent_Identity=43.4426229508197, Blast_Score=221, Evalue=5e-59,
Organism=Escherichia coli, GI1788069, Length=236, Percent_Identity=27.1186440677966, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789059, Length=248, Percent_Identity=26.6129032258064, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789519, Length=253, Percent_Identity=26.0869565217391, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1789170, Length=216, Percent_Identity=28.2407407407407, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI226510968, Length=228, Percent_Identity=26.3157894736842, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1790635, Length=264, Percent_Identity=25, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787540, Length=229, Percent_Identity=25.3275109170306, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790753, Length=230, Percent_Identity=23.4782608695652, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 29059; Mature: 28928

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLTELTGNPRHDRLLMLIDERGYMNIDELASLLEVSTQTVRRDIRKLSEQGLITRHHGG
CCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
AGRASSVVNTAFEQREISWTQEKKAIAEAVADYIPDGSTIFITIGTTVEQVARALLNHNH
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCC
LRIITNSLRVAHILYNNPRFEVMVPGGTLRPHNSGIIGPSAAAFVAGFRADYLVTSVGAI
EEEEECCEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
ESDGALLEFDVNEASVVKTMMAHSRHILLAADHTKYHASAAVEIGNVSQITALFTDEYPG
CCCCCEEEEECCHHHHHHHHHHCCCEEEEEECCCCEECEEEEEECCCCEEEEEECCCCCC
PALQNLLQSQQIEVVQVSPSLDDAVSA
HHHHHHHHCCCEEEEEECCCCHHHHCC
>Mature Secondary Structure 
SLTELTGNPRHDRLLMLIDERGYMNIDELASLLEVSTQTVRRDIRKLSEQGLITRHHGG
CCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
AGRASSVVNTAFEQREISWTQEKKAIAEAVADYIPDGSTIFITIGTTVEQVARALLNHNH
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCC
LRIITNSLRVAHILYNNPRFEVMVPGGTLRPHNSGIIGPSAAAFVAGFRADYLVTSVGAI
EEEEECCEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
ESDGALLEFDVNEASVVKTMMAHSRHILLAADHTKYHASAAVEIGNVSQITALFTDEYPG
CCCCCEEEEECCHHHHHHHHHHCCCEEEEEECCCCEECEEEEEECCCCEEEEEECCCCCC
PALQNLLQSQQIEVVQVSPSLDDAVSA
HHHHHHHHCCCEEEEEECCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8346018; 9278503 [H]