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The map label for this gene is ydcN [H]

Identifier: 29143878

GI number: 29143878

Start: 3677597

End: 3678163

Strand: Reverse

Name: ydcN [H]

Synonym: t3577

Alternate gene names: 29143878

Gene position: 3678163-3677597 (Counterclockwise)

Preceding gene: 29143881

Following gene: 29143873

Centisome position: 76.76

GC content: 58.91

Gene sequence:

>567_bases
GTGAACGTTGGATGCTTTATGACACAACCTATTAGCGTCATTGCCAGAAGCCTGGTACGCGAACGCCAGCAAACCGGACT
GTCGCTGGCGGAGATTGCGCGGCGCGCAGGCATCGCTAAATCTACGCTTTCACAACTGGAAGCAGGGAACGGCAACCCCA
GCCTGGAGACGCTATGGTCGCTATGCGTCGCGCTCGACATTCCCTTTGCCAGGCTGCTGGAGCCGCAGGTACAAAAAACG
CAGGTGATTCGCCGCGGAGAAGGCACCAAAGTCGTGGCGGAGCAGGCGCATTATCAGGCGATATTACTGGCGGCGTGTCC
GCCCGGCGCGCGGCGTGATATCTATCTGCTGTTGACGCAGCCGGGGGCCGACCGGATCTCTCATCCGCATCCGCCGGGGT
CGGTGGAACATATTATTGTTACGCAGGGAAAAGCCCTCGTCGGCTTAACCGAGGCGCCGGAAGAGCTGGCGGAGGGCGAT
TACATTTGTTATCCCGGCGACCAGGCGCATATCTTTAAAGCGCTGGAACCGGATACTCAGGCTATCCTGGTAGCGGAGCA
GAATTGA

Upstream 100 bases:

>100_bases
GGAAAAATAGTGTTTCATCTTCTTTAGTCATATCGAACGAATTTTCATTATAATGAACGGAACAGATTTGCTTTACAAGA
CGAACATTTCGTTCGTTATA

Downstream 100 bases:

>100_bases
AATTGCCGGATGGCGGCGTAACCGCCTTATCCGGCCGACAAAAAATAAAACCGTAGGCCCGGTAAGCTTGCGCCATCGGG
CACACGACTTACTGCAGATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MNVGCFMTQPISVIARSLVRERQQTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARLLEPQVQKT
QVIRRGEGTKVVAEQAHYQAILLAACPPGARRDIYLLLTQPGADRISHPHPPGSVEHIIVTQGKALVGLTEAPEELAEGD
YICYPGDQAHIFKALEPDTQAILVAEQN

Sequences:

>Translated_188_residues
MNVGCFMTQPISVIARSLVRERQQTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARLLEPQVQKT
QVIRRGEGTKVVAEQAHYQAILLAACPPGARRDIYLLLTQPGADRISHPHPPGSVEHIIVTQGKALVGLTEAPEELAEGD
YICYPGDQAHIFKALEPDTQAILVAEQN
>Mature_188_residues
MNVGCFMTQPISVIARSLVRERQQTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARLLEPQVQKT
QVIRRGEGTKVVAEQAHYQAILLAACPPGARRDIYLLLTQPGADRISHPHPPGSVEHIIVTQGKALVGLTEAPEELAEGD
YICYPGDQAHIFKALEPDTQAILVAEQN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=161, Percent_Identity=24.8447204968944, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 20337; Mature: 20337

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVGCFMTQPISVIARSLVRERQQTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWS
CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHH
LCVALDIPFARLLEPQVQKTQVIRRGEGTKVVAEQAHYQAILLAACPPGARRDIYLLLTQ
HHHHHCCCHHHHCCHHHHHHHHHHCCCCCEEHHHHCCEEEEEEEECCCCCCCCEEEEEEC
PGADRISHPHPPGSVEHIIVTQGKALVGLTEAPEELAEGDYICYPGDQAHIFKALEPDTQ
CCCCCCCCCCCCCCCCEEEEECCCEEEECCCCHHHHHCCCEEEECCCHHHEEECCCCCCE
AILVAEQN
EEEEEECC
>Mature Secondary Structure
MNVGCFMTQPISVIARSLVRERQQTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWS
CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHH
LCVALDIPFARLLEPQVQKTQVIRRGEGTKVVAEQAHYQAILLAACPPGARRDIYLLLTQ
HHHHHCCCHHHHCCHHHHHHHHHHCCCCCEEHHHHCCEEEEEEEECCCCCCCCEEEEEEC
PGADRISHPHPPGSVEHIIVTQGKALVGLTEAPEELAEGDYICYPGDQAHIFKALEPDTQ
CCCCCCCCCCCCCCCCEEEEECCCEEEECCCCHHHHHCCCEEEECCCHHHEEECCCCCCE
AILVAEQN
EEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]