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The map label for this gene is rhaS [H]

Identifier: 29143873

GI number: 29143873

Start: 3671189

End: 3672025

Strand: Reverse

Name: rhaS [H]

Synonym: t3571

Alternate gene names: 29143873

Gene position: 3672025-3671189 (Counterclockwise)

Preceding gene: 29143878

Following gene: 29143872

Centisome position: 76.63

GC content: 53.64

Gene sequence:

>837_bases
ATGACCGTACTGCATAGCGTGGATTTTTTTCCATCAGGTAAAGCGCCCGTGGCGATTGAACCTCGTCTGCCGCAAGCCGC
TTTCCCTGAACATCATCATGATTTTCATGAAATCGTGATTGTGGAACACGGTACGGGCATTCATGTATTCAACGGGCAGC
CGTATACCATCAGCGGCGGTACCGTGTGTTTTGTTCGCGATCACGACCGGCATTTATATGAACATACCGACAACCTATGC
CTGACGAATGTACTGTGGCGTTCACCGGACGCCTTCCAGTTCCTGGCGGGGTTGGATCAATTGCTGCCGCAGGAGCAGGA
TGGTTACTATCCTTCTCACTGGCGGGTGAATCAGAGTGTGTTGCAGCAGGTGCGCCAGTTGGTCGGTCTGATGGAGCGCG
CCGGAGACGGCATGGATGCGCCTGCCGTGGCGAATCGCGAAATTTTGTTTATGCAACTACTGGTGTTGTTACGCCGCAGT
AGCCTGATGGAAGGCGCGACCAATAACGACGCCAAACTCAACCAACTGATGGCATGGCTGGAAGACCATTTTGCGGAGGA
GGTCTGCTGGGAGGCGGTAGCTGAACAGTTTTCGCTGTCGCTACGTACGCTGCATCGTCAGCTTAAACAGCATACCGGGC
TGACGCCGCAACGTTACCTTAATCGCCTGCGTTTGATCAAAGCCCGGCATTTATTGCGCCATAGCGATCATAGCGTGACA
GAAATCGCGTACCGCTGCGGTTTTGGCGACAGTAACCACTTTTCGACTCTGTTTCGCCGAGAATTTAACTGGTCGCCGCG
GGATATCCGTCAGGGACGCGATGCGATAATCCAGTAA

Upstream 100 bases:

>100_bases
AAAAAAGACCATGTTTGCGCGCTTTAGCGTCAAAAATTTAAGGTGAGGCCGATAACCCTTAATTACTATTCGGACATGTT
GAATTCAGGAGGAAGCAACC

Downstream 100 bases:

>100_bases
CGCGAACGCTATCAACGTTTTCGTCGCCAATATGCTGATAATTATACCCTTTAATACCGGATGGCGGCTGCGCCTTACCT
GGCCTACGGCGGCGAGCGGT

Product: transcriptional activator RhaS

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MTVLHSVDFFPSGKAPVAIEPRLPQAAFPEHHHDFHEIVIVEHGTGIHVFNGQPYTISGGTVCFVRDHDRHLYEHTDNLC
LTNVLWRSPDAFQFLAGLDQLLPQEQDGYYPSHWRVNQSVLQQVRQLVGLMERAGDGMDAPAVANREILFMQLLVLLRRS
SLMEGATNNDAKLNQLMAWLEDHFAEEVCWEAVAEQFSLSLRTLHRQLKQHTGLTPQRYLNRLRLIKARHLLRHSDHSVT
EIAYRCGFGDSNHFSTLFRREFNWSPRDIRQGRDAIIQ

Sequences:

>Translated_278_residues
MTVLHSVDFFPSGKAPVAIEPRLPQAAFPEHHHDFHEIVIVEHGTGIHVFNGQPYTISGGTVCFVRDHDRHLYEHTDNLC
LTNVLWRSPDAFQFLAGLDQLLPQEQDGYYPSHWRVNQSVLQQVRQLVGLMERAGDGMDAPAVANREILFMQLLVLLRRS
SLMEGATNNDAKLNQLMAWLEDHFAEEVCWEAVAEQFSLSLRTLHRQLKQHTGLTPQRYLNRLRLIKARHLLRHSDHSVT
EIAYRCGFGDSNHFSTLFRREFNWSPRDIRQGRDAIIQ
>Mature_277_residues
TVLHSVDFFPSGKAPVAIEPRLPQAAFPEHHHDFHEIVIVEHGTGIHVFNGQPYTISGGTVCFVRDHDRHLYEHTDNLCL
TNVLWRSPDAFQFLAGLDQLLPQEQDGYYPSHWRVNQSVLQQVRQLVGLMERAGDGMDAPAVANREILFMQLLVLLRRSS
LMEGATNNDAKLNQLMAWLEDHFAEEVCWEAVAEQFSLSLRTLHRQLKQHTGLTPQRYLNRLRLIKARHLLRHSDHSVTE
IAYRCGFGDSNHFSTLFRREFNWSPRDIRQGRDAIIQ

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=278, Percent_Identity=83.0935251798561, Blast_Score=473, Evalue=1e-135,
Organism=Escherichia coli, GI171474011, Length=266, Percent_Identity=33.0827067669173, Blast_Score=156, Evalue=1e-39,
Organism=Escherichia coli, GI1788725, Length=88, Percent_Identity=35.2272727272727, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1790391, Length=111, Percent_Identity=31.5315315315315, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32090; Mature: 31959

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVLHSVDFFPSGKAPVAIEPRLPQAAFPEHHHDFHEIVIVEHGTGIHVFNGQPYTISGG
CCEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCCEEECCC
TVCFVRDHDRHLYEHTDNLCLTNVLWRSPDAFQFLAGLDQLLPQEQDGYYPSHWRVNQSV
EEEEEECCCHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
LQQVRQLVGLMERAGDGMDAPAVANREILFMQLLVLLRRSSLMEGATNNDAKLNQLMAWL
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
EDHFAEEVCWEAVAEQFSLSLRTLHRQLKQHTGLTPQRYLNRLRLIKARHLLRHSDHSVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHH
EIAYRCGFGDSNHFSTLFRREFNWSPRDIRQGRDAIIQ
HHHHHCCCCCCHHHHHHHHHHCCCCHHHHHCCHHHHCC
>Mature Secondary Structure 
TVLHSVDFFPSGKAPVAIEPRLPQAAFPEHHHDFHEIVIVEHGTGIHVFNGQPYTISGG
CEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCCEEECCC
TVCFVRDHDRHLYEHTDNLCLTNVLWRSPDAFQFLAGLDQLLPQEQDGYYPSHWRVNQSV
EEEEEECCCHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
LQQVRQLVGLMERAGDGMDAPAVANREILFMQLLVLLRRSSLMEGATNNDAKLNQLMAWL
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
EDHFAEEVCWEAVAEQFSLSLRTLHRQLKQHTGLTPQRYLNRLRLIKARHLLRHSDHSVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHH
EIAYRCGFGDSNHFSTLFRREFNWSPRDIRQGRDAIIQ
HHHHHCCCCCCHHHHHHHHHHCCCCHHHHHCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA