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The map label for this gene is ydfJ [H]

Identifier: 29141880

GI number: 29141880

Start: 1472823

End: 1474202

Strand: Direct

Name: ydfJ [H]

Synonym: t1428

Alternate gene names: 29141880

Gene position: 1472823-1474202 (Clockwise)

Preceding gene: 29141879

Following gene: 29141884

Centisome position: 30.74

GC content: 50.14

Gene sequence:

>1380_bases
ATGACACAAATAAAGCATGAACGATCGACTCAGGATTTAGTGCGCGCTGCCGTATCTGGCTGGTTAGGCACCGCGCTTGA
ATTTATGGATTTTCAGTTATATTCACTAGGCGCGGCTCTGGTCTTCCATGAGATATTTTTCCCGGAACAGTCTGCCGCGA
TGGCGCTTATTCTGGCAATGGGCACCTATGGTGCAGGTTATATAGCCAGAATTATCGGCGCCTTTGTTTTTGGTAAAATG
GGCGACCGCATCGGACGAAAAAAAGTATTGTTTATTACTATCACCATGATGGGGATCTGCACCACGCTGATTGGCGTACT
GCCGACGTATGCGCAAATCGGCATTTTTGCGCCAGTATTACTGGTAACATTGCGAATTATACAGGGGCTGGGCGCCGGGG
CGGAAATTTCCGGCGCGGGTACCATGCTGGCCGAGTATGCGCCGAAAGGAAAGCGTGGCATCATTTCCTCGCTGGTCGCG
ATGGGCACCAATTGCGGTACGTTGAGCGCGACGGCGATCTGGGCGGTGATGTTCTTTGCGCTTGAACGCGAACAACTGAT
CGCCTGGGGATGGCGTATTCCTTTCCTGGCGAGCGTCGTTGTTATGATATTCGCGATCTGGCTGCGAATGAATCTGAAAG
AAAGTCCGGTATTCGAAAAAGTAAGCGAAGGCGAAAAATCGCCAGCGTTAACGCCTGCGTCAGAAAATACATTGGGCGCG
ATGTTTACCAGCAAATCTTTCTGGCTGGCCACCGGTTTACGTTTTGGGCAGGCGGGGAATTCCGGGCTTATTCAAACTTT
CCTTGCCGGATATTTAGTTCAGACGTTATTATTTAACAAATCTATCCCAACCGATGCGTTAATGATAAGTTCCGTAATTG
GTTTTATCACTATCCCACTCTTGGGGTGGTTGTCCGATAAATACGGTCGTCGGCTACCGTATATAATATTGAATATCTCC
GCGATTATTCTCGCCTGGCCGATGTTGTCTATTGTGGTAGATAAAACGTATAGCCCTGGCGTAATTATGGCGGCGCTCAT
TGTTATTCATAACTTTGCCGTGCTGGGATTATTTGCGCTGGAAAACATCACCATGGCGGAAATTTTCGGATCGCGTAATC
GCTTCACCCGGATGGCGATTTCAAAAGAGGCAGGAGGCCTGGTGGCGGTTGGCTTTGGCCCCGTCCTCGCAGGGATCTTT
TGTAACATGACCGATTCCTGGCTGCCCATCTTAATTATGCTGGTGCTCTACTCGTGTATTGGTCTGATTTCTGCGCTGTT
GATGCCGGAGGTCAGAGATCGCGACCTGAGTTTGCCTGAGGATGCGGCGGAAGCGACAGCGGCAGAGAAGTTACGCCACT
CCGCAACCCAGACGAGTTAA

Upstream 100 bases:

>100_bases
AAGACCAGCGTCAATGCTGCAAAGTCTTACTCACGTTTGCGAAATAATATAAATACTTGCGAGTAAGTGGTACGCATCTT
ACCTCTTAGAGATTGCCTAT

Downstream 100 bases:

>100_bases
ATCGTGTCGACGGTATGGCCGGAACGTTAATGCGGTTTCGGCCATGCTGTCCGGTCACTTTTGTTTAATTAGCGTAAATC
CAAATGCACCAGGGCAGGCG

Product: membrane transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 459; Mature: 458

Protein sequence:

>459_residues
MTQIKHERSTQDLVRAAVSGWLGTALEFMDFQLYSLGAALVFHEIFFPEQSAAMALILAMGTYGAGYIARIIGAFVFGKM
GDRIGRKKVLFITITMMGICTTLIGVLPTYAQIGIFAPVLLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSLVA
MGTNCGTLSATAIWAVMFFALEREQLIAWGWRIPFLASVVVMIFAIWLRMNLKESPVFEKVSEGEKSPALTPASENTLGA
MFTSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKSIPTDALMISSVIGFITIPLLGWLSDKYGRRLPYIILNIS
AIILAWPMLSIVVDKTYSPGVIMAALIVIHNFAVLGLFALENITMAEIFGSRNRFTRMAISKEAGGLVAVGFGPVLAGIF
CNMTDSWLPILIMLVLYSCIGLISALLMPEVRDRDLSLPEDAAEATAAEKLRHSATQTS

Sequences:

>Translated_459_residues
MTQIKHERSTQDLVRAAVSGWLGTALEFMDFQLYSLGAALVFHEIFFPEQSAAMALILAMGTYGAGYIARIIGAFVFGKM
GDRIGRKKVLFITITMMGICTTLIGVLPTYAQIGIFAPVLLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSLVA
MGTNCGTLSATAIWAVMFFALEREQLIAWGWRIPFLASVVVMIFAIWLRMNLKESPVFEKVSEGEKSPALTPASENTLGA
MFTSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKSIPTDALMISSVIGFITIPLLGWLSDKYGRRLPYIILNIS
AIILAWPMLSIVVDKTYSPGVIMAALIVIHNFAVLGLFALENITMAEIFGSRNRFTRMAISKEAGGLVAVGFGPVLAGIF
CNMTDSWLPILIMLVLYSCIGLISALLMPEVRDRDLSLPEDAAEATAAEKLRHSATQTS
>Mature_458_residues
TQIKHERSTQDLVRAAVSGWLGTALEFMDFQLYSLGAALVFHEIFFPEQSAAMALILAMGTYGAGYIARIIGAFVFGKMG
DRIGRKKVLFITITMMGICTTLIGVLPTYAQIGIFAPVLLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSLVAM
GTNCGTLSATAIWAVMFFALEREQLIAWGWRIPFLASVVVMIFAIWLRMNLKESPVFEKVSEGEKSPALTPASENTLGAM
FTSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKSIPTDALMISSVIGFITIPLLGWLSDKYGRRLPYIILNISA
IILAWPMLSIVVDKTYSPGVIMAALIVIHNFAVLGLFALENITMAEIFGSRNRFTRMAISKEAGGLVAVGFGPVLAGIFC
NMTDSWLPILIMLVLYSCIGLISALLMPEVRDRDLSLPEDAAEATAAEKLRHSATQTS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]

Homologues:

Organism=Escherichia coli, GI1788292, Length=418, Percent_Identity=32.5358851674641, Blast_Score=221, Evalue=7e-59,
Organism=Escherichia coli, GI1790550, Length=447, Percent_Identity=28.4116331096197, Blast_Score=181, Evalue=7e-47,
Organism=Escherichia coli, GI1789941, Length=340, Percent_Identity=34.7058823529412, Blast_Score=171, Evalue=1e-43,
Organism=Escherichia coli, GI1788942, Length=372, Percent_Identity=31.1827956989247, Blast_Score=141, Evalue=7e-35,
Organism=Escherichia coli, GI87082231, Length=227, Percent_Identity=27.3127753303965, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI87082404, Length=345, Percent_Identity=24.0579710144928, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004736
- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR005828 [H]

Pfam domain/function: PF00083 Sugar_tr [H]

EC number: NA

Molecular weight: Translated: 49637; Mature: 49505

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TQIKHERSTQDLVRAAVSGWLGTALEFMDFQLYSLGAALVFHEIFFPEQSAAMALILAM
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH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HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]