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The map label for this gene is rhmR [H]

Identifier: 29141086

GI number: 29141086

Start: 646900

End: 647682

Strand: Direct

Name: rhmR [H]

Synonym: t0571

Alternate gene names: 29141086

Gene position: 646900-647682 (Clockwise)

Preceding gene: 29141085

Following gene: 29141087

Centisome position: 13.5

GC content: 50.83

Gene sequence:

>783_bases
ATGTTGGAATCAAGTAAAGTCCCGGCTCTTACTCGCGCAATCGACATCCTCAATTTGATCGCGCGTATTGGCCCATGCAG
CGCGGCAATCATTATTGAAACGTTGCGTATTCCAAAAAGCACCGCGTACCTGCTGTTGAATGAATTAAAACGTCAGCGAT
TTATTAGCCTCGATCATCAGGAGAACTACTGCCTGTGGACTAAGCTCGTTGAATTGTCGGGTCATGCGCTCAGCAAGATG
GATCTGAGGGAGCTGGCGCGTCCTCGTCTAACACAACTGATGGATGAAATCGGGCTGCTGTGTCACTTGGGGATCATCGA
CCACGAAAATGCGTATTACATACTGAAAGTGGAATCCTCATCCACTATCAGCGTGCGCTCGCATGAGGGGAAAAGCCTCT
CTCTTTATCGTTCCGGCATCGGCAAATGCCTGCTGGCATGGCAGCCGGCCGCCGTACGCAAAGCCATTATTGAAAAAATG
GTATGGGAGCGAGCCACGCTGACCACCATCACCGAGCCGCAACAATTGAATGATGAGCTGGAACGCATTCGCCAGCGTGG
ATGGAGCTTTGATAACGGGGAGGATTATCCGGATGTCCGCTGCGTTGCCGCACCGGTATTTAATGCCAGAAACGAACTGA
CCGCGGCAATTTCACTGGTCGGCACGCGCCTGCAAATCAACGAAGAGAATCTTGATTATTTGGCCGGTAAAGCTATTGCC
TGTGCCAAAGATATTTCACGCCTGTTGGGATGGAAAAGTCCCTTCGACTCACTCGCATCTTAA

Upstream 100 bases:

>100_bases
CTTCCACTCCGTTGGAAGGCGGATAAGCTTTGACGCGCTTCACAATTTTTTCCCTACTGACCTTTCACACTGATTCCAGT
GTCTCAGACTGGAGTCCAAT

Downstream 100 bases:

>100_bases
AATGGAGAATATTATGACTCTTCCTAAAATTAAACACGTTCGAGCCTGGTTTATTGGGGGCGCTACCGCAGAGAAAGGGG
CTGGCGGCGGGGATTATCAC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MLESSKVPALTRAIDILNLIARIGPCSAAIIIETLRIPKSTAYLLLNELKRQRFISLDHQENYCLWTKLVELSGHALSKM
DLRELARPRLTQLMDEIGLLCHLGIIDHENAYYILKVESSSTISVRSHEGKSLSLYRSGIGKCLLAWQPAAVRKAIIEKM
VWERATLTTITEPQQLNDELERIRQRGWSFDNGEDYPDVRCVAAPVFNARNELTAAISLVGTRLQINEENLDYLAGKAIA
CAKDISRLLGWKSPFDSLAS

Sequences:

>Translated_260_residues
MLESSKVPALTRAIDILNLIARIGPCSAAIIIETLRIPKSTAYLLLNELKRQRFISLDHQENYCLWTKLVELSGHALSKM
DLRELARPRLTQLMDEIGLLCHLGIIDHENAYYILKVESSSTISVRSHEGKSLSLYRSGIGKCLLAWQPAAVRKAIIEKM
VWERATLTTITEPQQLNDELERIRQRGWSFDNGEDYPDVRCVAAPVFNARNELTAAISLVGTRLQINEENLDYLAGKAIA
CAKDISRLLGWKSPFDSLAS
>Mature_260_residues
MLESSKVPALTRAIDILNLIARIGPCSAAIIIETLRIPKSTAYLLLNELKRQRFISLDHQENYCLWTKLVELSGHALSKM
DLRELARPRLTQLMDEIGLLCHLGIIDHENAYYILKVESSSTISVRSHEGKSLSLYRSGIGKCLLAWQPAAVRKAIIEKM
VWERATLTTITEPQQLNDELERIRQRGWSFDNGEDYPDVRCVAAPVFNARNELTAAISLVGTRLQINEENLDYLAGKAIA
CAKDISRLLGWKSPFDSLAS

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1788581, Length=260, Percent_Identity=86.5384615384615, Blast_Score=464, Evalue=1e-132,
Organism=Escherichia coli, GI1790752, Length=251, Percent_Identity=31.4741035856574, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1788131, Length=221, Percent_Identity=32.1266968325792, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1786468, Length=247, Percent_Identity=29.1497975708502, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI87082359, Length=251, Percent_Identity=25.0996015936255, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1789999, Length=213, Percent_Identity=30.9859154929577, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786715, Length=247, Percent_Identity=26.7206477732794, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 29231; Mature: 29231

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLESSKVPALTRAIDILNLIARIGPCSAAIIIETLRIPKSTAYLLLNELKRQRFISLDHQ
CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC
ENYCLWTKLVELSGHALSKMDLRELARPRLTQLMDEIGLLCHLGIIDHENAYYILKVESS
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEEEEEECCC
STISVRSHEGKSLSLYRSGIGKCLLAWQPAAVRKAIIEKMVWERATLTTITEPQQLNDEL
CEEEEECCCCCCHHHHHHCHHHEEEECCCHHHHHHHHHHHHHHHHHHEECCCHHHHHHHH
ERIRQRGWSFDNGEDYPDVRCVAAPVFNARNELTAAISLVGTRLQINEENLDYLAGKAIA
HHHHHHCCCCCCCCCCCCCEEEEHHHHCCHHHHHHHHHHHHCEEEECCCCHHHHHCHHHH
CAKDISRLLGWKSPFDSLAS
HHHHHHHHHCCCCCHHHHCC
>Mature Secondary Structure
MLESSKVPALTRAIDILNLIARIGPCSAAIIIETLRIPKSTAYLLLNELKRQRFISLDHQ
CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC
ENYCLWTKLVELSGHALSKMDLRELARPRLTQLMDEIGLLCHLGIIDHENAYYILKVESS
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEEEEEECCC
STISVRSHEGKSLSLYRSGIGKCLLAWQPAAVRKAIIEKMVWERATLTTITEPQQLNDEL
CEEEEECCCCCCHHHHHHCHHHEEEECCCHHHHHHHHHHHHHHHHHHEECCCHHHHHHHH
ERIRQRGWSFDNGEDYPDVRCVAAPVFNARNELTAAISLVGTRLQINEENLDYLAGKAIA
HHHHHHCCCCCCCCCCCCCEEEEHHHHCCHHHHHHHHHHHHCEEEECCCCHHHHHCHHHH
CAKDISRLLGWKSPFDSLAS
HHHHHHHHHCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]