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The map label for this gene is caiF [H]

Identifier: 29140611

GI number: 29140611

Start: 80352

End: 80747

Strand: Direct

Name: caiF [H]

Synonym: t0069

Alternate gene names: 29140611

Gene position: 80352-80747 (Clockwise)

Preceding gene: 29140610

Following gene: 29140618

Centisome position: 1.68

GC content: 46.46

Gene sequence:

>396_bases
ATGTGTGAAAAATATGTTGAAAGACCGCTTTATTTGTTAATTGCTGACTGGATGATGGCAGAGAACCGATGGATCACTGC
CAGGGAGATTTCCCGTCAATTTGATATTGAACATTGCAAAGCAATTAATACGCTCTCCTATATTCTGTCAGAAGTGGGGG
AAATTGTTTGTGAAGTGAAGATGATCCCTAACCAAATTGCAGGACGAGGCTGCCAGTGCCAGCGTCTGGTGAAAGTCGTG
AGTATCGACTCTCAACTCTATCGCCGATTGAATCATAATTTGCAGGAAAGAAAAGTGAGCGTGGCGAAAGCGCCGCGGCT
GTCTGCCGTTCCCCCCACAGAGCTAAACCGTGAGCAGAAATGGCAGATGATGCTCTCCAAGAGTATGCGTCGCTAA

Upstream 100 bases:

>100_bases
GTCGCATACTATCTTTCATATCCACAATTTTAATATGGCTTAGTTTTTATTAGTTTGGACAGGCCGTAGCCAGATTTTTA
ATTTGTGAAATGGTGTGCTT

Downstream 100 bases:

>100_bases
TTGTCTGTTTAACCTGCTGGCGGGGTAAACGGTAATTGACGCGTAGGCCGGATAAGCGTGAGCGCATCCGGCATCAATTA
CTGTGCTGATTTTGGCTTCA

Product: DNA-binding transcriptional activator CaiF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MCEKYVERPLYLLIADWMMAENRWITAREISRQFDIEHCKAINTLSYILSEVGEIVCEVKMIPNQIAGRGCQCQRLVKVV
SIDSQLYRRLNHNLQERKVSVAKAPRLSAVPPTELNREQKWQMMLSKSMRR

Sequences:

>Translated_131_residues
MCEKYVERPLYLLIADWMMAENRWITAREISRQFDIEHCKAINTLSYILSEVGEIVCEVKMIPNQIAGRGCQCQRLVKVV
SIDSQLYRRLNHNLQERKVSVAKAPRLSAVPPTELNREQKWQMMLSKSMRR
>Mature_131_residues
MCEKYVERPLYLLIADWMMAENRWITAREISRQFDIEHCKAINTLSYILSEVGEIVCEVKMIPNQIAGRGCQCQRLVKVV
SIDSQLYRRLNHNLQERKVSVAKAPRLSAVPPTELNREQKWQMMLSKSMRR

Specific function: Potential transcriptional activator of carnitine metabolism [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081680, Length=131, Percent_Identity=76.3358778625954, Blast_Score=209, Evalue=3e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020357
- ProDom:   PD081346 [H]

Pfam domain/function: PF07180 DUF1401 [H]

EC number: NA

Molecular weight: Translated: 15409; Mature: 15409

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
9.2 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
9.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCEKYVERPLYLLIADWMMAENRWITAREISRQFDIEHCKAINTLSYILSEVGEIVCEVK
CCHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
MIPNQIAGRGCQCQRLVKVVSIDSQLYRRLNHNLQERKVSVAKAPRLSAVPPTELNREQK
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHH
WQMMLSKSMRR
HHHHHHHHHCC
>Mature Secondary Structure
MCEKYVERPLYLLIADWMMAENRWITAREISRQFDIEHCKAINTLSYILSEVGEIVCEVK
CCHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
MIPNQIAGRGCQCQRLVKVVSIDSQLYRRLNHNLQERKVSVAKAPRLSAVPPTELNREQK
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHH
WQMMLSKSMRR
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8631699; 9278503 [H]