Click here to switch to the map view.

The map label for this gene is yfeN [H]

Identifier: 29140578

GI number: 29140578

Start: 38773

End: 39534

Strand: Reverse

Name: yfeN [H]

Synonym: t0036

Alternate gene names: 29140578

Gene position: 39534-38773 (Counterclockwise)

Preceding gene: 29140585

Following gene: 29140577

Centisome position: 0.83

GC content: 43.96

Gene sequence:

>762_bases
ATGAAAAATAAGAAATATATTAATAGTCTACTCGCCGCATGTGTTCTTTTCTCTTGCTTTAATGGCCAGGCAGCGGAATT
GAAACGCGTATACGGTAAACTTAGCTTCGGATATGGCGACTGGAATAAAGGCTTTGTCAATGTCGATCGCGGCGAAGTGT
GGAAAGCGGTAGCCGATTTCGGCGCCGTGTTTGACAGGGGCGAATTTGCATCATTTTATGAAATGAACGTGCTCAACCAT
CCGGTAGAAGGCCGTAACCATGTTACCCAATTTCTGGGACATTATAGGGTAGTAGAAGGCTCTAACTTTACCGCAATGAT
GAAACTCTATATGTCGATGGAGAATAAATTCGGTGATGAATTAAACATGATGTACGGGGTAGGTTATCTGGGTTTAACCA
GCCCATCAGGCTTTATTAAGCCCTATTTCGCTGTTCATAACTTATCGAACGATTATACCTCTAAAAAGTATGGACAGGCG
ACAGGCTTTAACGGTTATGTTCTCGGTTGGGTCGCGGCTTATAACTTCGATATGTTTAATGAAAAGTTCGTCATTTCAAA
CTGGAACGAAGTTGAAATGGATCGTAATGATGCCTACGCCGAACAACAGGGTGGGACGACCGGCCTGAACGGCGCGGTAA
CGTTTACATGGAAATTTATGCCGCGATGGACCGCCTCCGTCTCTTACCGTTACTTCAATAATAAATTGGGGTATAACGGC
TACGGCGACCGTATGAATTACCTGATCGGCTTCAAGTTTTAA

Upstream 100 bases:

>100_bases
ATATTTTTGAGACATCTATCACCTACGTATAAAAAGACACTCCTTAGAATTCGCTTCTTTACACAACATTTCACTGTGTT
TTTACCTCATGGAGTTGAGC

Downstream 100 bases:

>100_bases
TAATTAATAAACTTGATGAATATTACTTAATTTCCCCGGTTTGTAGTCGTGAATGACACGACTACAGGCATTGTTTTTCT
TTAATGTAGCGTAAATGGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MKNKKYINSLLAACVLFSCFNGQAAELKRVYGKLSFGYGDWNKGFVNVDRGEVWKAVADFGAVFDRGEFASFYEMNVLNH
PVEGRNHVTQFLGHYRVVEGSNFTAMMKLYMSMENKFGDELNMMYGVGYLGLTSPSGFIKPYFAVHNLSNDYTSKKYGQA
TGFNGYVLGWVAAYNFDMFNEKFVISNWNEVEMDRNDAYAEQQGGTTGLNGAVTFTWKFMPRWTASVSYRYFNNKLGYNG
YGDRMNYLIGFKF

Sequences:

>Translated_253_residues
MKNKKYINSLLAACVLFSCFNGQAAELKRVYGKLSFGYGDWNKGFVNVDRGEVWKAVADFGAVFDRGEFASFYEMNVLNH
PVEGRNHVTQFLGHYRVVEGSNFTAMMKLYMSMENKFGDELNMMYGVGYLGLTSPSGFIKPYFAVHNLSNDYTSKKYGQA
TGFNGYVLGWVAAYNFDMFNEKFVISNWNEVEMDRNDAYAEQQGGTTGLNGAVTFTWKFMPRWTASVSYRYFNNKLGYNG
YGDRMNYLIGFKF
>Mature_253_residues
MKNKKYINSLLAACVLFSCFNGQAAELKRVYGKLSFGYGDWNKGFVNVDRGEVWKAVADFGAVFDRGEFASFYEMNVLNH
PVEGRNHVTQFLGHYRVVEGSNFTAMMKLYMSMENKFGDELNMMYGVGYLGLTSPSGFIKPYFAVHNLSNDYTSKKYGQA
TGFNGYVLGWVAAYNFDMFNEKFVISNWNEVEMDRNDAYAEQQGGTTGLNGAVTFTWKFMPRWTASVSYRYFNNKLGYNG
YGDRMNYLIGFKF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To V.parahaemolyticus ompK [H]

Homologues:

Organism=Escherichia coli, GI1788747, Length=137, Percent_Identity=44.5255474452555, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018013 [H]

Pfam domain/function: PF03502 Channel_Tsx [H]

EC number: NA

Molecular weight: Translated: 28922; Mature: 28922

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKKYINSLLAACVLFSCFNGQAAELKRVYGKLSFGYGDWNKGFVNVDRGEVWKAVADF
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHH
GAVFDRGEFASFYEMNVLNHPVEGRNHVTQFLGHYRVVEGSNFTAMMKLYMSMENKFGDE
HHHHCCCCCHHHEEHHHHCCCCCCHHHHHHHHHCEEEEECCCHHHHHHHHHHHHHHCCCH
LNMMYGVGYLGLTSPSGFIKPYFAVHNLSNDYTSKKYGQATGFNGYVLGWVAAYNFDMFN
HHHHHCCCEEECCCCCCCCCHHHHEECCCCCCCCHHCCCCCCCCCEEEEEHEECCCCCCC
EKFVISNWNEVEMDRNDAYAEQQGGTTGLNGAVTFTWKFMPRWTASVSYRYFNNKLGYNG
CEEEEECCCEEEECCCHHHHHHCCCCCCCCCEEEEEEEECCCEECEEEEEEECCCCCCCC
YGDRMNYLIGFKF
CCCCEEEEEEECC
>Mature Secondary Structure
MKNKKYINSLLAACVLFSCFNGQAAELKRVYGKLSFGYGDWNKGFVNVDRGEVWKAVADF
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHH
GAVFDRGEFASFYEMNVLNHPVEGRNHVTQFLGHYRVVEGSNFTAMMKLYMSMENKFGDE
HHHHCCCCCHHHEEHHHHCCCCCCHHHHHHHHHCEEEEECCCHHHHHHHHHHHHHHCCCH
LNMMYGVGYLGLTSPSGFIKPYFAVHNLSNDYTSKKYGQATGFNGYVLGWVAAYNFDMFN
HHHHHCCCEEECCCCCCCCCHHHHEECCCCCCCCHHCCCCCCCCCEEEEEHEECCCCCCC
EKFVISNWNEVEMDRNDAYAEQQGGTTGLNGAVTFTWKFMPRWTASVSYRYFNNKLGYNG
CEEEEECCCEEEECCCHHHHHHCCCCCCCCCEEEEEEEECCCEECEEEEEEECCCCCCCC
YGDRMNYLIGFKF
CCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7559336; 9205837; 9278503 [H]