| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572932
Identifier: 28572932
GI number: 28572932
Start: 897747
End: 898235
Strand: Reverse
Name: 28572932
Synonym: TW791
Alternate gene names: NA
Gene position: 898235-897747 (Counterclockwise)
Preceding gene: 28572933
Following gene: 28572931
Centisome position: 97.01
GC content: 51.12
Gene sequence:
>489_bases GTGCCCACGCGAATTCGGGGAGTTTCAAAGAGTGATGTTGATGCTCTCACTCGGCAACTGGGTCGCGCACCAAGGGGGGT AATGGCTGTTATCCTGCGATGCGCCTGCCATGCACCGGCAGTTATAAAAACCGCCCCGCGATTGCCTGACGGTCAGCCCT TTCCAACACTGTACTACCTGACGCTCCCAAGGGCTGTTGCAGTTTTTTCTCAACTTGAGTCAGAAGGTTTTATGCGTACC ATGAATGATGAGCTTGACAATAACGCCTCGCTCAGGAAGCAGTACATGGAGGCGCATCTGAGTTATATCTCGCTGCGCAA TGATGTAAGAATAGTACCCGAGATTGCAAATGTGTCTGTTGGTGGTATGCCGTATAGAGTAAAGTGTTTGCATGCCCTCG TGGCACATGCCCTCGTGACAGGTGCCAATCCCGTTGGTAATATGGCTTTATCAGCGGTTAACTGGTCGTTGCGTTACTGT GACTGTTAG
Upstream 100 bases:
>100_bases AACAAGGAAATTGTTCTCAGTTCTGTGAATTGGGGGCGCATGTTTTTGGAAAGCATAATAAATGCGGGCCCCTCTAACGC TCATTATGTTCCGAAATAAA
Downstream 100 bases:
>100_bases GTACAGTAACGCTTGTGTGTGTGCGATGCAGACGGTGAGGTTTGCTCGCCGCGATTTTGAGAGGTAAGAGTTTTAGCTCA TGGCAGAAAAAGTATTGATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 162; Mature: 161
Protein sequence:
>162_residues MPTRIRGVSKSDVDALTRQLGRAPRGVMAVILRCACHAPAVIKTAPRLPDGQPFPTLYYLTLPRAVAVFSQLESEGFMRT MNDELDNNASLRKQYMEAHLSYISLRNDVRIVPEIANVSVGGMPYRVKCLHALVAHALVTGANPVGNMALSAVNWSLRYC DC
Sequences:
>Translated_162_residues MPTRIRGVSKSDVDALTRQLGRAPRGVMAVILRCACHAPAVIKTAPRLPDGQPFPTLYYLTLPRAVAVFSQLESEGFMRT MNDELDNNASLRKQYMEAHLSYISLRNDVRIVPEIANVSVGGMPYRVKCLHALVAHALVTGANPVGNMALSAVNWSLRYC DC >Mature_161_residues PTRIRGVSKSDVDALTRQLGRAPRGVMAVILRCACHAPAVIKTAPRLPDGQPFPTLYYLTLPRAVAVFSQLESEGFMRTM NDELDNNASLRKQYMEAHLSYISLRNDVRIVPEIANVSVGGMPYRVKCLHALVAHALVTGANPVGNMALSAVNWSLRYCD C
Specific function: Unknown
COG id: COG1507
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17812; Mature: 17681
Theoretical pI: Translated: 9.27; Mature: 9.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 7.4 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 6.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTRIRGVSKSDVDALTRQLGRAPRGVMAVILRCACHAPAVIKTAPRLPDGQPFPTLYYL CCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCEEEEE TLPRAVAVFSQLESEGFMRTMNDELDNNASLRKQYMEAHLSYISLRNDVRIVPEIANVSV HHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEHHHCCCC GGMPYRVKCLHALVAHALVTGANPVGNMALSAVNWSLRYCDC CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEECCC >Mature Secondary Structure PTRIRGVSKSDVDALTRQLGRAPRGVMAVILRCACHAPAVIKTAPRLPDGQPFPTLYYL CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCEEEEE TLPRAVAVFSQLESEGFMRTMNDELDNNASLRKQYMEAHLSYISLRNDVRIVPEIANVSV HHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEHHHCCCC GGMPYRVKCLHALVAHALVTGANPVGNMALSAVNWSLRYCDC CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA