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The map label for this gene is ccdA

Identifier: 28572910

GI number: 28572910

Start: 865758

End: 866444

Strand: Direct

Name: ccdA

Synonym: TW769

Alternate gene names: NA

Gene position: 865758-866444 (Clockwise)

Preceding gene: 28572909

Following gene: 28572911

Centisome position: 93.5

GC content: 44.69

Gene sequence:

>687_bases
GTGAATCCGGAAGATATCGCCGTATCCGGCAGTGTGGCTGTTGCCGCCTTTATAGCGGCCCTTGCCGGTCTTCTCTCTCT
TGCTTCTCCATGCATCTTGCCTGTTGTGACAGGATACATTGGTGCAATAAGCTCTTCAAATAAACCGATTTCAACAGCGA
TTTATTTCGCATTTGGAGTCAGTTCCGTTTTTATATCTCTAAACACCTTCAGTGGAGCTACAGGATATTTTCTGGTCAGA
TACCAAGAAATAATTATCCGCCTATCAGGTGTTGTCATATTCATCATGGGCTTAATTTATATGGGGGTTATCAAAACAAA
GTTCTTAATAAAACCTGCCGTGCAGAGAACGAATCCCTTTCTGCTTGGCCTGTTATTCAGCGTTGGCTGGACCCCGTGCA
TGGGGCCAGTCTTAGTGGCTGTGAATGCGTTATCTCTGTCGGGTAACAATTCTTCCGTTTGGAGGGGTTTTCTACTTGGG
GTTTTCTACTGTATTGGTTTGGGCCTAGCGTTTCTGCTGATTGCAACGGGTTGGAATGCACTTAAGTTTTTATATCGCTA
CACAAAAATAATTAATATTTTTGGCGGACTGCTACTCCTGATAACCGGAATTTTCATGCTGACAGGTGTGTGGGCTATCC
TGATGCACTTAATCCAGGAATCATTCGGCTACGATGCTCCGCTCTAG

Upstream 100 bases:

>100_bases
ATAAGAGTGTTGTGATTAGTCAATTTGATTTTACCTTCTGTCTCGCCTCAGCCTCATCAAGCCTGGTATTCACAGAGCGA
CTTGCAGGAAAGCAGTAAAC

Downstream 100 bases:

>100_bases
TCTCTGGCTTTGGAGGCAACTCACAAGTATGAGGGTTGCGCTGATTCTGTTGCTAATGCTTGCGTTGGCAGCTGTACCCG
GTTCCCTCATACCGCAAACA

Product: cytochrome c-type biogenesis protein CcdA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MNPEDIAVSGSVAVAAFIAALAGLLSLASPCILPVVTGYIGAISSSNKPISTAIYFAFGVSSVFISLNTFSGATGYFLVR
YQEIIIRLSGVVIFIMGLIYMGVIKTKFLIKPAVQRTNPFLLGLLFSVGWTPCMGPVLVAVNALSLSGNNSSVWRGFLLG
VFYCIGLGLAFLLIATGWNALKFLYRYTKIINIFGGLLLLITGIFMLTGVWAILMHLIQESFGYDAPL

Sequences:

>Translated_228_residues
MNPEDIAVSGSVAVAAFIAALAGLLSLASPCILPVVTGYIGAISSSNKPISTAIYFAFGVSSVFISLNTFSGATGYFLVR
YQEIIIRLSGVVIFIMGLIYMGVIKTKFLIKPAVQRTNPFLLGLLFSVGWTPCMGPVLVAVNALSLSGNNSSVWRGFLLG
VFYCIGLGLAFLLIATGWNALKFLYRYTKIINIFGGLLLLITGIFMLTGVWAILMHLIQESFGYDAPL
>Mature_228_residues
MNPEDIAVSGSVAVAAFIAALAGLLSLASPCILPVVTGYIGAISSSNKPISTAIYFAFGVSSVFISLNTFSGATGYFLVR
YQEIIIRLSGVVIFIMGLIYMGVIKTKFLIKPAVQRTNPFLLGLLFSVGWTPCMGPVLVAVNALSLSGNNSSVWRGFLLG
VFYCIGLGLAFLLIATGWNALKFLYRYTKIINIFGGLLLLITGIFMLTGVWAILMHLIQESFGYDAPL

Specific function: Could be involved in cytochrome c synthesis [H]

COG id: COG0785

COG function: function code O; Cytochrome c biogenesis protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DsbD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003834 [H]

Pfam domain/function: PF02683 DsbD [H]

EC number: NA

Molecular weight: Translated: 24425; Mature: 24425

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPEDIAVSGSVAVAAFIAALAGLLSLASPCILPVVTGYIGAISSSNKPISTAIYFAFGV
CCCCCEEECCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
SSVFISLNTFSGATGYFLVRYQEIIIRLSGVVIFIMGLIYMGVIKTKFLIKPAVQRTNPF
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LLGLLFSVGWTPCMGPVLVAVNALSLSGNNSSVWRGFLLGVFYCIGLGLAFLLIATGWNA
HHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LKFLYRYTKIINIFGGLLLLITGIFMLTGVWAILMHLIQESFGYDAPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNPEDIAVSGSVAVAAFIAALAGLLSLASPCILPVVTGYIGAISSSNKPISTAIYFAFGV
CCCCCEEECCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
SSVFISLNTFSGATGYFLVRYQEIIIRLSGVVIFIMGLIYMGVIKTKFLIKPAVQRTNPF
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LLGLLFSVGWTPCMGPVLVAVNALSLSGNNSSVWRGFLLGVFYCIGLGLAFLLIATGWNA
HHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LKFLYRYTKIINIFGGLLLLITGIFMLTGVWAILMHLIQESFGYDAPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]