| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is menC [H]
Identifier: 28572892
GI number: 28572892
Start: 847917
End: 849119
Strand: Direct
Name: menC [H]
Synonym: TW751
Alternate gene names: 28572892
Gene position: 847917-849119 (Clockwise)
Preceding gene: 28572891
Following gene: 28572893
Centisome position: 91.57
GC content: 44.47
Gene sequence:
>1203_bases TTGATGGATTATCCGTCAATCGACACCCTCTTAGAATCTGCCCATATTGTTACTCTGCCCATGAAGTACCCTTTCATGGG GCTTAGCGAACGTCAAGCTGTTCTGTTTGAAGGACCCAATTCTTGGGCCGAGTACTCCCCGTTCATGGGGTGCAATGATA CAAGGATGTGGCTTGCGTCTGCAATTGAATATGGCTGGGGTAACACCAATGTGCTTTCTGTGCCAAATCTAGATTTGGAC AACACTAATTTTGCGAGTAGATCAAAATACGGGTACATAGCAAATCCTCAAACGAGTAATAAGGACCATTCTGACAACAA ACGGTTTTACACACAGACCAAAAACCACCGAGAGATCCCCGTTAACGCAATCCTTCCAGATATTCCTGCGAGTAAGATGT CAGAGATTCTCGGCAAAGATCTGCAGGGGTGCAAATGCGTAAAAATAAAGGTCGGAAAGCATTTTCAAGATCGAGATATT CACAGAATACGTGCGGTCCTAGATTTTATGGGAGCGGATACAATGCTCAGGCTGGACGCAAATTGCAAATGGAATGTTTC AGAAACGCTCAACAATCTGGATGTACTAGAAGATAATGACCTTCTTGAAAATGTGTCCTACATCGAACAACCGTGCAGAA CTACACGGGAGCTTATTACACTTAAGCAGAAGATGGATACCCGTGGATATGTAACTAAAATTGCGATCGATGAAAGCCTT AGAGATCTGCTATTGCATTGGCAGAAAAATCGTAAATGGAGCAACAACTCGGGTATAACATACACAACAGAGCTTCGCGA AACCCTATCAGCGTGTGACATGCTGGTTTTGAAGTTACAACCCATGGGTGGAATGCGCGCGGTGGCGGATTTACTCGAGA GTATAAAAAACAATATCAAGGTGAATGTTGGATATACCGTATCATCATCCTTGGAAACTTCGCTCGGTATAGAAATGGGC CTAGCTCTTGCTCTCAATTTGCCAAATATTACCCTGCCAGTAGGACTTGCAACCGCAGGTCTGTTGGATGCTGACATAAC AGATGACCCACTTTTGCCAAACAAAGGGTACATAACCCCAAGAAAGATTGAGGTAAACAAAAAACTCCTTAACAGGTACG CGGCCGATAAAAGGCACGTGGTATGGTGGCATCGACGAATTAGGGCAGCCCATAGAGCCCTTTTTCAGGATCTTTCCGAC TGA
Upstream 100 bases:
>100_bases AGTCACACAAATTTGCCGAGTCTATGGAAATACTGTTTGATGTAAAGACAGATTGTACGGAAGGCACACAATATCAATCA TCCTGCGGGAAATCTTTCGA
Downstream 100 bases:
>100_bases GAGAAGCTTTGTATGTCTGATACAAAACAACCACCATGTGACATAAATGCCGAGCGGGCACTGCTTGGCAGTGTCTTACT CAGTAAAGACGCAGCGGCAG
Product: O-succinylbenzoate synthase
Products: NA
Alternate protein names: OSB synthase; OSBS; 4-(2'-carboxyphenyl)-4-oxybutyric acid synthase; o-succinylbenzoic acid synthase [H]
Number of amino acids: Translated: 400; Mature: 400
Protein sequence:
>400_residues MMDYPSIDTLLESAHIVTLPMKYPFMGLSERQAVLFEGPNSWAEYSPFMGCNDTRMWLASAIEYGWGNTNVLSVPNLDLD NTNFASRSKYGYIANPQTSNKDHSDNKRFYTQTKNHREIPVNAILPDIPASKMSEILGKDLQGCKCVKIKVGKHFQDRDI HRIRAVLDFMGADTMLRLDANCKWNVSETLNNLDVLEDNDLLENVSYIEQPCRTTRELITLKQKMDTRGYVTKIAIDESL RDLLLHWQKNRKWSNNSGITYTTELRETLSACDMLVLKLQPMGGMRAVADLLESIKNNIKVNVGYTVSSSLETSLGIEMG LALALNLPNITLPVGLATAGLLDADITDDPLLPNKGYITPRKIEVNKKLLNRYAADKRHVVWWHRRIRAAHRALFQDLSD
Sequences:
>Translated_400_residues MMDYPSIDTLLESAHIVTLPMKYPFMGLSERQAVLFEGPNSWAEYSPFMGCNDTRMWLASAIEYGWGNTNVLSVPNLDLD NTNFASRSKYGYIANPQTSNKDHSDNKRFYTQTKNHREIPVNAILPDIPASKMSEILGKDLQGCKCVKIKVGKHFQDRDI HRIRAVLDFMGADTMLRLDANCKWNVSETLNNLDVLEDNDLLENVSYIEQPCRTTRELITLKQKMDTRGYVTKIAIDESL RDLLLHWQKNRKWSNNSGITYTTELRETLSACDMLVLKLQPMGGMRAVADLLESIKNNIKVNVGYTVSSSLETSLGIEMG LALALNLPNITLPVGLATAGLLDADITDDPLLPNKGYITPRKIEVNKKLLNRYAADKRHVVWWHRRIRAAHRALFQDLSD >Mature_400_residues MMDYPSIDTLLESAHIVTLPMKYPFMGLSERQAVLFEGPNSWAEYSPFMGCNDTRMWLASAIEYGWGNTNVLSVPNLDLD NTNFASRSKYGYIANPQTSNKDHSDNKRFYTQTKNHREIPVNAILPDIPASKMSEILGKDLQGCKCVKIKVGKHFQDRDI HRIRAVLDFMGADTMLRLDANCKWNVSETLNNLDVLEDNDLLENVSYIEQPCRTTRELITLKQKMDTRGYVTKIAIDESL RDLLLHWQKNRKWSNNSGITYTTELRETLSACDMLVLKLQPMGGMRAVADLLESIKNNIKVNVGYTVSSSLETSLGIEMG LALALNLPNITLPVGLATAGLLDADITDDPLLPNKGYITPRKIEVNKKLLNRYAADKRHVVWWHRRIRAAHRALFQDLSD
Specific function: Converts SHCHC to OSB [H]
COG id: COG4948
COG function: function code MR; L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mandelate racemase/muconate lactonizing enzyme family. MenC type 1 subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013342 - InterPro: IPR001354 - InterPro: IPR010196 [H]
Pfam domain/function: PF01188 MR_MLE [H]
EC number: =4.2.1.113 [H]
Molecular weight: Translated: 45362; Mature: 45362
Theoretical pI: Translated: 7.56; Mature: 7.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMDYPSIDTLLESAHIVTLPMKYPFMGLSERQAVLFEGPNSWAEYSPFMGCNDTRMWLAS CCCCCCHHHHHCCCEEEEEECCCCCCCCCCCCEEEEECCCCCHHCCCCCCCCHHHHHHHH AIEYGWGNTNVLSVPNLDLDNTNFASRSKYGYIANPQTSNKDHSDNKRFYTQTKNHREIP HHHCCCCCCCEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEECCCCCCCCC VNAILPDIPASKMSEILGKDLQGCKCVKIKVGKHFQDRDIHRIRAVLDFMGADTMLRLDA HHHCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECC NCKWNVSETLNNLDVLEDNDLLENVSYIEQPCRTTRELITLKQKMDTRGYVTKIAIDESL CCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH RDLLLHWQKNRKWSNNSGITYTTELRETLSACDMLVLKLQPMGGMRAVADLLESIKNNIK HHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHCCEE VNVGYTVSSSLETSLGIEMGLALALNLPNITLPVGLATAGLLDADITDDPLLPNKGYITP EEEEEEECCCCHHHHCHHCCEEEEEECCCEEEEHHHHHHCCEECCCCCCCCCCCCCCCCC RKIEVNKKLLNRYAADKRHVVWWHRRIRAAHRALFQDLSD CEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MMDYPSIDTLLESAHIVTLPMKYPFMGLSERQAVLFEGPNSWAEYSPFMGCNDTRMWLAS CCCCCCHHHHHCCCEEEEEECCCCCCCCCCCCEEEEECCCCCHHCCCCCCCCHHHHHHHH AIEYGWGNTNVLSVPNLDLDNTNFASRSKYGYIANPQTSNKDHSDNKRFYTQTKNHREIP HHHCCCCCCCEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEECCCCCCCCC VNAILPDIPASKMSEILGKDLQGCKCVKIKVGKHFQDRDIHRIRAVLDFMGADTMLRLDA HHHCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECC NCKWNVSETLNNLDVLEDNDLLENVSYIEQPCRTTRELITLKQKMDTRGYVTKIAIDESL CCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH RDLLLHWQKNRKWSNNSGITYTTELRETLSACDMLVLKLQPMGGMRAVADLLESIKNNIK HHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHCCEE VNVGYTVSSSLETSLGIEMGLALALNLPNITLPVGLATAGLLDADITDDPLLPNKGYITP EEEEEEECCCCHHHHCHHCCEEEEEECCCEEEEHHHHHHCCEECCCCCCCCCCCCCCCCC RKIEVNKKLLNRYAADKRHVVWWHRRIRAAHRALFQDLSD CEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]