| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572838
Identifier: 28572838
GI number: 28572838
Start: 790518
End: 790790
Strand: Direct
Name: 28572838
Synonym: TW697
Alternate gene names: NA
Gene position: 790518-790790 (Clockwise)
Preceding gene: 28572834
Following gene: 28572839
Centisome position: 85.37
GC content: 48.35
Gene sequence:
>273_bases GTGGTCGATTTGGCACATGAAGCCCTATGCACGAGATTGCGAATGCGTCGAGACATATTAACCCCCAACAGAATGAGCGC CAGTGCGAGCAGCAAAGTTACAAAAAACCCGACCGGTCCCGGTGTGACGATATCAGGGTCCAGTGCGAGCAGCAAACCGC AATGCATACAGATCAAAACGAGAATATCCTACCAAAATACGGGTTTACACCCAGTGCGAGCTAAACTCAACATACGTTCC TTGATGAGAGATGTGTATCTCCTTGGGAAATAA
Upstream 100 bases:
>100_bases GCCTCTTTGAGCACTTTTGTCAAATACAGATTTGCCAAGGACACCCTGTGAATCTGGGGTCTAGGCGCTATCCGTTTTTG CAGATGGACCTGCCGAGCTG
Downstream 100 bases:
>100_bases AGCAAGTTTAGAATTATCTAACTTACCTGATATACCGAGAACAAAATGTCTCCGTGCAATTTGCGACCATGTAATTTGTA GCAGGGAATCATAAATAACG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 90; Mature: 90
Protein sequence:
>90_residues MVDLAHEALCTRLRMRRDILTPNRMSASASSKVTKNPTGPGVTISGSSASSKPQCIQIKTRISYQNTGLHPVRAKLNIRS LMRDVYLLGK
Sequences:
>Translated_90_residues MVDLAHEALCTRLRMRRDILTPNRMSASASSKVTKNPTGPGVTISGSSASSKPQCIQIKTRISYQNTGLHPVRAKLNIRS LMRDVYLLGK >Mature_90_residues MVDLAHEALCTRLRMRRDILTPNRMSASASSKVTKNPTGPGVTISGSSASSKPQCIQIKTRISYQNTGLHPVRAKLNIRS LMRDVYLLGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9896; Mature: 9896
Theoretical pI: Translated: 11.57; Mature: 11.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVDLAHEALCTRLRMRRDILTPNRMSASASSKVTKNPTGPGVTISGSSASSKPQCIQIKT CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEE RISYQNTGLHPVRAKLNIRSLMRDVYLLGK EEEECCCCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MVDLAHEALCTRLRMRRDILTPNRMSASASSKVTKNPTGPGVTISGSSASSKPQCIQIKT CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEE RISYQNTGLHPVRAKLNIRSLMRDVYLLGK EEEECCCCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA