| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572829
Identifier: 28572829
GI number: 28572829
Start: 776233
End: 778524
Strand: Direct
Name: 28572829
Synonym: TW688
Alternate gene names: NA
Gene position: 776233-778524 (Clockwise)
Preceding gene: 28572828
Following gene: 28572831
Centisome position: 83.83
GC content: 44.63
Gene sequence:
>2292_bases TTGATGAATGGAAAGATACTAGGCTCGGTGACACCTTGTCGCGTTTTGGCCCGCGTGGCCCTTCTTCTCCTCCTATCATC CCTACAATATGAAACAGCCTTTGCCAGACAGACACCTCCTGCCCTATCCCTCCTATCATCTGTTTCATCTACATCTGTTT CATCTAATACCAAATACACAAGAGTAAGTAATACAAATACACAAGAAGTATGTGTAACAACTAACACAAATGTATCTCTC CTAATAGATCCTGTTACAAGCAGTACAAAACAAACCCTGTCCTGCACCCCATCTCTCTCACCCCAACCACAGACACATAT ATATGTCCCATACACAGATACATCCTCATACCTATATGTCCCATATATAACCAACACACATATATCCCTCTATTACACAG ATAAGAAAGCAGATCCATCATCTTTCCTAACCTTCCCTCATACAGACATAGCAACCCCATACGGAGATGAGAAAGTAATC TCCATAACAAAGACAACAACCAATCTCATAGCTCTCCTAACAACCCGTAACATCTTCTTCTTTGACATACATGTAACAGA GAAACCAAAGATAACTGTTCCCATACACAAACAGATAGATAACACATATCTCTCAGACATACCATCACTCAGAAACTCCA GATACACCTTCTCTCTAACACACCCAAACAAAGACATAACCATAGATAGATACACCGGACAGATACATCTCTCATCCCTA CCAACATCTCCCATAACAGCCATAGCCATAAACAAAGACACAAGCACCCATATCACCTATGCAATAGATACACAATATAG ACAAATTCATCTTGATCCTCCTAAGAAGCCCCGCAAGAGAGATGTGACACCTGTGACTAATACTGGTGTCTGTGCTGCTC AGACCTATTCCCCTACCTATGCAACAGAATCTCTAGAGGATATGGCCATTCGTGTGACAAATCCAAGCTGGAAGGCTTCC TCTTATATACCATCCTCATACACCTGGTCTGTTCCTCCTGACACCACAGCACCCATTCCTCCCTCTCCATGTGGTCCAAC CAAGAAATGGTCACCGGGTGACTGGACACCTACCTGGGTTACCCATCCAACTCCTGTTGACTCCTACGCAACAGAGTCTC TGGAAGATATGATACGTAAGTTCAAGTCACAGTTAGAGAGTCCAACAAAGAAATCCTTTAGTGCTATAACAGGAAAAACC TTTGACACAAAACCTCTCCTGCGTGGTGGTGCATACTTCCCAACATCATCCAAGACAGTTGGGTTCTCCACTACGGTTTG GATAACAGCACCTTTGTCTTCCATTGACCTTAATGTGCCTCTTACCAATGGTATTCAGACGAATGTATTTGTATATCTTG TATCTGGCACATTCACCTATACCTTCCCCACCATCGGTGCATTCTTTACAACAACCCCAAGCAAGGGAACCATACGGATT GCCTGGGTCCTTCCTGCCTATGACCCAACCTGGCATGTGCCATTTACAACAGGTGGTATGTATGCCATATTTGACGGGTC CTCAGCAACATTTCGTGATCTTCTGAATGCATATTCATCTCTATCGGCATCCTTTACGACCGATACAACCTTCTATGCCT CTAACTCTGGGGATATAACTGTTACAGTGCCTCTTACCAATGGTATTCAGACGAATGTATTTGTGCATCTCTCCTCTGGA GGATTATCGACAGTTGTTCCGCTCATGACTGCATACCTTACTGCTTCCTCTGAAATCAGTAAGGGAACTATCGCAGCTGC ATGGGCCGCTCCTGCCTATGACCCAACCTGGCATGTGCCATTTACAACAGCTGATCTGTATGCCACTTATGACGGACCAA CAGGTGAACTGGTTGGTGTGTTTTACACCCCATATACCATAAATAGGACAGTATCGCGTGGTCAGACTGTAAGTCTTAGT CCTCTTCCTACCGGAACCTATTCATTTCCAACATATGTGTCTTATGCAACAAAGCCTGGAACTAATCGAGTGCCTGCCTA TTTATTCATGAATCCTACCAATGGTGCGCTGGTTGGTTCTGTGTATCCCTATGTTGCCCAGGGTCAGTATCAGTTCCCCG TTGCTGGTGCTGTATATAACCTGCATGTTACAGGTAAGAATAAGCGTCCTAAGAGGGAAGCTGCTGCTCCATGTAGTCCA ACCAAGAAATGGTCACCGGGTGACTGGACACCTACCTGGGTTACCCATCCAGCTCCTGTTAACTCCTATGCAACAGAGTC TCTGGAAGATATGATACGTAAGTTCAAGGAGAGTCTCAAGGCTGCTTCATAG
Upstream 100 bases:
>100_bases GGGTAACACTGGTGTTCTAGTATTTATGGATTGCGTCATGCAATGAGGTTTGCTATGCTTATCACCGGTTATTTAAGAGG GAATGGGGTGATTAGTTAAA
Downstream 100 bases:
>100_bases GCCAGAGTAGCTGTGTAATCCAGAGAAGAACACATTCACGATTGTAAAGTTGAATATAATCGTTGTAAATCCTATCAAGG AGAGCACAGAGGAACGAGTT
Product: WiSP family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 763; Mature: 763
Protein sequence:
>763_residues MMNGKILGSVTPCRVLARVALLLLLSSLQYETAFARQTPPALSLLSSVSSTSVSSNTKYTRVSNTNTQEVCVTTNTNVSL LIDPVTSSTKQTLSCTPSLSPQPQTHIYVPYTDTSSYLYVPYITNTHISLYYTDKKADPSSFLTFPHTDIATPYGDEKVI SITKTTTNLIALLTTRNIFFFDIHVTEKPKITVPIHKQIDNTYLSDIPSLRNSRYTFSLTHPNKDITIDRYTGQIHLSSL PTSPITAIAINKDTSTHITYAIDTQYRQIHLDPPKKPRKRDVTPVTNTGVCAAQTYSPTYATESLEDMAIRVTNPSWKAS SYIPSSYTWSVPPDTTAPIPPSPCGPTKKWSPGDWTPTWVTHPTPVDSYATESLEDMIRKFKSQLESPTKKSFSAITGKT FDTKPLLRGGAYFPTSSKTVGFSTTVWITAPLSSIDLNVPLTNGIQTNVFVYLVSGTFTYTFPTIGAFFTTTPSKGTIRI AWVLPAYDPTWHVPFTTGGMYAIFDGSSATFRDLLNAYSSLSASFTTDTTFYASNSGDITVTVPLTNGIQTNVFVHLSSG GLSTVVPLMTAYLTASSEISKGTIAAAWAAPAYDPTWHVPFTTADLYATYDGPTGELVGVFYTPYTINRTVSRGQTVSLS PLPTGTYSFPTYVSYATKPGTNRVPAYLFMNPTNGALVGSVYPYVAQGQYQFPVAGAVYNLHVTGKNKRPKREAAAPCSP TKKWSPGDWTPTWVTHPAPVNSYATESLEDMIRKFKESLKAAS
Sequences:
>Translated_763_residues MMNGKILGSVTPCRVLARVALLLLLSSLQYETAFARQTPPALSLLSSVSSTSVSSNTKYTRVSNTNTQEVCVTTNTNVSL LIDPVTSSTKQTLSCTPSLSPQPQTHIYVPYTDTSSYLYVPYITNTHISLYYTDKKADPSSFLTFPHTDIATPYGDEKVI SITKTTTNLIALLTTRNIFFFDIHVTEKPKITVPIHKQIDNTYLSDIPSLRNSRYTFSLTHPNKDITIDRYTGQIHLSSL PTSPITAIAINKDTSTHITYAIDTQYRQIHLDPPKKPRKRDVTPVTNTGVCAAQTYSPTYATESLEDMAIRVTNPSWKAS SYIPSSYTWSVPPDTTAPIPPSPCGPTKKWSPGDWTPTWVTHPTPVDSYATESLEDMIRKFKSQLESPTKKSFSAITGKT FDTKPLLRGGAYFPTSSKTVGFSTTVWITAPLSSIDLNVPLTNGIQTNVFVYLVSGTFTYTFPTIGAFFTTTPSKGTIRI AWVLPAYDPTWHVPFTTGGMYAIFDGSSATFRDLLNAYSSLSASFTTDTTFYASNSGDITVTVPLTNGIQTNVFVHLSSG GLSTVVPLMTAYLTASSEISKGTIAAAWAAPAYDPTWHVPFTTADLYATYDGPTGELVGVFYTPYTINRTVSRGQTVSLS PLPTGTYSFPTYVSYATKPGTNRVPAYLFMNPTNGALVGSVYPYVAQGQYQFPVAGAVYNLHVTGKNKRPKREAAAPCSP TKKWSPGDWTPTWVTHPAPVNSYATESLEDMIRKFKESLKAAS >Mature_763_residues MMNGKILGSVTPCRVLARVALLLLLSSLQYETAFARQTPPALSLLSSVSSTSVSSNTKYTRVSNTNTQEVCVTTNTNVSL LIDPVTSSTKQTLSCTPSLSPQPQTHIYVPYTDTSSYLYVPYITNTHISLYYTDKKADPSSFLTFPHTDIATPYGDEKVI SITKTTTNLIALLTTRNIFFFDIHVTEKPKITVPIHKQIDNTYLSDIPSLRNSRYTFSLTHPNKDITIDRYTGQIHLSSL PTSPITAIAINKDTSTHITYAIDTQYRQIHLDPPKKPRKRDVTPVTNTGVCAAQTYSPTYATESLEDMAIRVTNPSWKAS SYIPSSYTWSVPPDTTAPIPPSPCGPTKKWSPGDWTPTWVTHPTPVDSYATESLEDMIRKFKSQLESPTKKSFSAITGKT FDTKPLLRGGAYFPTSSKTVGFSTTVWITAPLSSIDLNVPLTNGIQTNVFVYLVSGTFTYTFPTIGAFFTTTPSKGTIRI AWVLPAYDPTWHVPFTTGGMYAIFDGSSATFRDLLNAYSSLSASFTTDTTFYASNSGDITVTVPLTNGIQTNVFVHLSSG GLSTVVPLMTAYLTASSEISKGTIAAAWAAPAYDPTWHVPFTTADLYATYDGPTGELVGVFYTPYTINRTVSRGQTVSLS PLPTGTYSFPTYVSYATKPGTNRVPAYLFMNPTNGALVGSVYPYVAQGQYQFPVAGAVYNLHVTGKNKRPKREAAAPCSP TKKWSPGDWTPTWVTHPAPVNSYATESLEDMIRKFKESLKAAS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 83468; Mature: 83468
Theoretical pI: Translated: 9.17; Mature: 9.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMNGKILGSVTPCRVLARVALLLLLSSLQYETAFARQTPPALSLLSSVSSTSVSSNTKYT CCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEE RVSNTNTQEVCVTTNTNVSLLIDPVTSSTKQTLSCTPSLSPQPQTHIYVPYTDTSSYLYV EECCCCCCEEEEEECCCEEEEEECCCCCCCCEEEECCCCCCCCCEEEEEEEECCCCEEEE PYITNTHISLYYTDKKADPSSFLTFPHTDIATPYGDEKVISITKTTTNLIALLTTRNIFF EEEECCEEEEEEECCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCEEEEEEEECCEEE FDIHVTEKPKITVPIHKQIDNTYLSDIPSLRNSRYTFSLTHPNKDITIDRYTGQIHLSSL EEEEECCCCEEEEEHHHHCCCHHHHHCHHHCCCEEEEEEECCCCCEEEEEEECEEEEECC PTSPITAIAINKDTSTHITYAIDTQYRQIHLDPPKKPRKRDVTPVTNTGVCAAQTYSPTY CCCCEEEEEEECCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCC ATESLEDMAIRVTNPSWKASSYIPSSYTWSVPPDTTAPIPPSPCGPTKKWSPGDWTPTWV CCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE THPTPVDSYATESLEDMIRKFKSQLESPTKKSFSAITGKTFDTKPLLRGGAYFPTSSKTV ECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHCCCEECCCCCCEE GFSTTVWITAPLSSIDLNVPLTNGIQTNVFVYLVSGTFTYTFPTIGAFFTTTPSKGTIRI CEEEEEEEEECCCCEEEECCCCCCCCCEEEEEEEECEEEEECCCCCEEEEECCCCCEEEE AWVLPAYDPTWHVPFTTGGMYAIFDGSSATFRDLLNAYSSLSASFTTDTTFYASNSGDIT EEEEECCCCEEEEEEECCCEEEEECCCCHHHHHHHHHHHHCCCCEECCEEEEECCCCCEE VTVPLTNGIQTNVFVHLSSGGLSTVVPLMTAYLTASSEISKGTIAAAWAAPAYDPTWHVP EEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEECC FTTADLYATYDGPTGELVGVFYTPYTINRTVSRGQTVSLSPLPTGTYSFPTYVSYATKPG EEEEEEEEEECCCCCCEEEEEECCEEEECCCCCCCEEEECCCCCCCCCCCCEEEEECCCC TNRVPAYLFMNPTNGALVGSVYPYVAQGQYQFPVAGAVYNLHVTGKNKRPKREAAAPCSP CCCCCEEEEECCCCCEEEECCCCEEECCCEECCEEEEEEEEEEECCCCCCCHHCCCCCCC TKKWSPGDWTPTWVTHPAPVNSYATESLEDMIRKFKESLKAAS CCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MMNGKILGSVTPCRVLARVALLLLLSSLQYETAFARQTPPALSLLSSVSSTSVSSNTKYT CCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEE RVSNTNTQEVCVTTNTNVSLLIDPVTSSTKQTLSCTPSLSPQPQTHIYVPYTDTSSYLYV EECCCCCCEEEEEECCCEEEEEECCCCCCCCEEEECCCCCCCCCEEEEEEEECCCCEEEE PYITNTHISLYYTDKKADPSSFLTFPHTDIATPYGDEKVISITKTTTNLIALLTTRNIFF EEEECCEEEEEEECCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCEEEEEEEECCEEE FDIHVTEKPKITVPIHKQIDNTYLSDIPSLRNSRYTFSLTHPNKDITIDRYTGQIHLSSL EEEEECCCCEEEEEHHHHCCCHHHHHCHHHCCCEEEEEEECCCCCEEEEEEECEEEEECC PTSPITAIAINKDTSTHITYAIDTQYRQIHLDPPKKPRKRDVTPVTNTGVCAAQTYSPTY CCCCEEEEEEECCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCC ATESLEDMAIRVTNPSWKASSYIPSSYTWSVPPDTTAPIPPSPCGPTKKWSPGDWTPTWV CCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE THPTPVDSYATESLEDMIRKFKSQLESPTKKSFSAITGKTFDTKPLLRGGAYFPTSSKTV ECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHCCCEECCCCCCEE GFSTTVWITAPLSSIDLNVPLTNGIQTNVFVYLVSGTFTYTFPTIGAFFTTTPSKGTIRI CEEEEEEEEECCCCEEEECCCCCCCCCEEEEEEEECEEEEECCCCCEEEEECCCCCEEEE AWVLPAYDPTWHVPFTTGGMYAIFDGSSATFRDLLNAYSSLSASFTTDTTFYASNSGDIT EEEEECCCCEEEEEEECCCEEEEECCCCHHHHHHHHHHHHCCCCEECCEEEEECCCCCEE VTVPLTNGIQTNVFVHLSSGGLSTVVPLMTAYLTASSEISKGTIAAAWAAPAYDPTWHVP EEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEECC FTTADLYATYDGPTGELVGVFYTPYTINRTVSRGQTVSLSPLPTGTYSFPTYVSYATKPG EEEEEEEEEECCCCCCEEEEEECCEEEECCCCCCCEEEECCCCCCCCCCCCEEEEECCCC TNRVPAYLFMNPTNGALVGSVYPYVAQGQYQFPVAGAVYNLHVTGKNKRPKREAAAPCSP CCCCCEEEEECCCCCEEEECCCCEEECCCEECCEEEEEEEEEEECCCCCCCHHCCCCCCC TKKWSPGDWTPTWVTHPAPVNSYATESLEDMIRKFKESLKAAS CCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA