Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is 28572749

Identifier: 28572749

GI number: 28572749

Start: 682344

End: 683117

Strand: Reverse

Name: 28572749

Synonym: TW602

Alternate gene names: NA

Gene position: 683117-682344 (Counterclockwise)

Preceding gene: 28572750

Following gene: 28572744

Centisome position: 73.78

GC content: 42.38

Gene sequence:

>774_bases
ATGCCTAAGACAACAACATCTGTAACACAACCCAGACAATCATCCTTCTTTCCCCTCCTAACAGGTTTCTTCACCTATCT
CTTTCTCCTTACAAGACCACATAAGAGAAGACTGTTCATGGCAGGATTAGTTAGGAAATATTACAGAGATAGTACTGCGC
GTACAGTACTATCAACCACAGATATCTTCCTGTTCTCATTTGTTATCACCTTTGCCATTGCTGTATTGATTGGTATGTCT
GTTATCGGGACTACTGTCTTGCCCCTACTCCGACTTGATGCGTATCGCTATGCTTTCGGGGAAACCGTCTTATACACTGG
AGCTTTCTTGTTTTTCTCAATTGCGTTGTACCGGAGTGGGTTTTATGGTGATAAACGATCCTTCTTCCTCCGCTACTCCT
ATTACTCACAAACCCCATCTTTCCAAAACCCAACCAAACGCAGACAAATCCTCCTGCTTGACACTGTTACAAGATATGGA
ACACGGTGGTGTGTAGGTGGTGTTTTGTTTTTATTGGTGTTTTTGTTTACTACCACTCGTTTTGTGTCCTCGATCCCATC
AAGTACGCTTCTTAGCGCCCTCCTGGGTGCTTTCTTTCTGTTTGTAATTCTTATTCTCCCGATCATATCTCCACTTACCG
TGGATAGTGTGTTCGCCTCAGTTCTTCGCAAGCTCCTCTATAACCTACATATAAGAAGATATGGACCAATACCAAAGGAA
CTAACAGATATAGTTACCCAAGCCTATGAGATATATCCACAGGTAACTACATAA

Upstream 100 bases:

>100_bases
AAGAACAATTGGTTACTCTATACCCTCTTTCACCCATCTAACCCCCGTGTTACAATCGACCCCCGTGTTACAATCAACCC
GTAACAGATAAGGAGATAAA

Downstream 100 bases:

>100_bases
GCCTTAGTTATGTACTGCATAACTAACCACCGATTCAATAACTCACTGATAAAGTGACTCATCAAACTGATACTGAGTAA
CTGATACTGAGTAACTGATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MPKTTTSVTQPRQSSFFPLLTGFFTYLFLLTRPHKRRLFMAGLVRKYYRDSTARTVLSTTDIFLFSFVITFAIAVLIGMS
VIGTTVLPLLRLDAYRYAFGETVLYTGAFLFFSIALYRSGFYGDKRSFFLRYSYYSQTPSFQNPTKRRQILLLDTVTRYG
TRWCVGGVLFLLVFLFTTTRFVSSIPSSTLLSALLGAFFLFVILILPIISPLTVDSVFASVLRKLLYNLHIRRYGPIPKE
LTDIVTQAYEIYPQVTT

Sequences:

>Translated_257_residues
MPKTTTSVTQPRQSSFFPLLTGFFTYLFLLTRPHKRRLFMAGLVRKYYRDSTARTVLSTTDIFLFSFVITFAIAVLIGMS
VIGTTVLPLLRLDAYRYAFGETVLYTGAFLFFSIALYRSGFYGDKRSFFLRYSYYSQTPSFQNPTKRRQILLLDTVTRYG
TRWCVGGVLFLLVFLFTTTRFVSSIPSSTLLSALLGAFFLFVILILPIISPLTVDSVFASVLRKLLYNLHIRRYGPIPKE
LTDIVTQAYEIYPQVTT
>Mature_256_residues
PKTTTSVTQPRQSSFFPLLTGFFTYLFLLTRPHKRRLFMAGLVRKYYRDSTARTVLSTTDIFLFSFVITFAIAVLIGMSV
IGTTVLPLLRLDAYRYAFGETVLYTGAFLFFSIALYRSGFYGDKRSFFLRYSYYSQTPSFQNPTKRRQILLLDTVTRYGT
RWCVGGVLFLLVFLFTTTRFVSSIPSSTLLSALLGAFFLFVILILPIISPLTVDSVFASVLRKLLYNLHIRRYGPIPKEL
TDIVTQAYEIYPQVTT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29465; Mature: 29334

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKTTTSVTQPRQSSFFPLLTGFFTYLFLLTRPHKRRLFMAGLVRKYYRDSTARTVLSTT
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DIFLFSFVITFAIAVLIGMSVIGTTVLPLLRLDAYRYAFGETVLYTGAFLFFSIALYRSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FYGDKRSFFLRYSYYSQTPSFQNPTKRRQILLLDTVTRYGTRWCVGGVLFLLVFLFTTTR
CCCCCHHEEEEEEHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVSSIPSSTLLSALLGAFFLFVILILPIISPLTVDSVFASVLRKLLYNLHIRRYGPIPKE
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH
LTDIVTQAYEIYPQVTT
HHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PKTTTSVTQPRQSSFFPLLTGFFTYLFLLTRPHKRRLFMAGLVRKYYRDSTARTVLSTT
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DIFLFSFVITFAIAVLIGMSVIGTTVLPLLRLDAYRYAFGETVLYTGAFLFFSIALYRSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FYGDKRSFFLRYSYYSQTPSFQNPTKRRQILLLDTVTRYGTRWCVGGVLFLLVFLFTTTR
CCCCCHHEEEEEEHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVSSIPSSTLLSALLGAFFLFVILILPIISPLTVDSVFASVLRKLLYNLHIRRYGPIPKE
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH
LTDIVTQAYEIYPQVTT
HHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA