Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is 28572741

Identifier: 28572741

GI number: 28572741

Start: 671258

End: 671836

Strand: Reverse

Name: 28572741

Synonym: TW593

Alternate gene names: NA

Gene position: 671836-671258 (Counterclockwise)

Preceding gene: 28572742

Following gene: 28572740

Centisome position: 72.56

GC content: 45.77

Gene sequence:

>579_bases
ATGAAAGCTCTTATTGGTCTTGTGGCTGTAATTCTTATTGCCATTCCAAATGCTCCAGCTGCACTTGCTGATACTGGCAA
TGTGGCTTCAGAATCAGCTGCGATTGATCGTTTCTATAACACTCTCAGCATTGCGCATTTGCCGAAGAAGACTCACCACA
AAGGCGGGTCGCTTAACGAGACAACTTTTAAGGCCGGTGCCATTGATTTTATTTTTAAAACCGATTCATCAAAATCTCAC
GGTTCCACACCTGAGATTCTGGAGGCTTATCTCAGAGTCAACTGGTTCACTCAGAAAGCTTTTGAAGTTGCAACGCTATT
CACCGGCGCCGGCCTTGGTAAAGCGGCGGGTAAGGCTGCTGCAAAGAAACTGTTTAAGTTTCTGGCTGATAAGGCTGCTG
GTAAACTTGTGAAGCAATTTTTGGAGCGTCTTGTTGTAAAAGCTGCCGATACCGCCGCAAATAAGGTTCTTCATTTTGGT
ATAGATGCCCTGTCTTTGCCCTGCAAGGGCCGTAAACCCTATTACATTAATCTTATTTCTTTTGGCGGTCAGTGTGGTAC
CCCCGCATCGCTTCGTTAG

Upstream 100 bases:

>100_bases
TTTTGGGTGTACACTTTAATCCCGTGGGGTACTCGGCGCAGTTCACTGGTTTCCTGCTGCCTGTAAGACTCCTGAGTTTT
GGGATATTTAGGGGGTTATC

Downstream 100 bases:

>100_bases
TCTTAATTGGCCGTTAGTGCATGAAGATATTTGTACAGCGAGGATTGCCTTTGAGCCGCTGGCTCTAAATACTTGAAAGT
GCCCTTCGGCGTGATGTATA

Product: secreted protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MKALIGLVAVILIAIPNAPAALADTGNVASESAAIDRFYNTLSIAHLPKKTHHKGGSLNETTFKAGAIDFIFKTDSSKSH
GSTPEILEAYLRVNWFTQKAFEVATLFTGAGLGKAAGKAAAKKLFKFLADKAAGKLVKQFLERLVVKAADTAANKVLHFG
IDALSLPCKGRKPYYINLISFGGQCGTPASLR

Sequences:

>Translated_192_residues
MKALIGLVAVILIAIPNAPAALADTGNVASESAAIDRFYNTLSIAHLPKKTHHKGGSLNETTFKAGAIDFIFKTDSSKSH
GSTPEILEAYLRVNWFTQKAFEVATLFTGAGLGKAAGKAAAKKLFKFLADKAAGKLVKQFLERLVVKAADTAANKVLHFG
IDALSLPCKGRKPYYINLISFGGQCGTPASLR
>Mature_192_residues
MKALIGLVAVILIAIPNAPAALADTGNVASESAAIDRFYNTLSIAHLPKKTHHKGGSLNETTFKAGAIDFIFKTDSSKSH
GSTPEILEAYLRVNWFTQKAFEVATLFTGAGLGKAAGKAAAKKLFKFLADKAAGKLVKQFLERLVVKAADTAANKVLHFG
IDALSLPCKGRKPYYINLISFGGQCGTPASLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20348; Mature: 20348

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKALIGLVAVILIAIPNAPAALADTGNVASESAAIDRFYNTLSIAHLPKKTHHKGGSLNE
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCC
TTFKAGAIDFIFKTDSSKSHGSTPEILEAYLRVNWFTQKAFEVATLFTGAGLGKAAGKAA
CEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
AKKLFKFLADKAAGKLVKQFLERLVVKAADTAANKVLHFGIDALSLPCKGRKPYYINLIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEEEE
FGGQCGTPASLR
ECCCCCCCCCCC
>Mature Secondary Structure
MKALIGLVAVILIAIPNAPAALADTGNVASESAAIDRFYNTLSIAHLPKKTHHKGGSLNE
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCC
TTFKAGAIDFIFKTDSSKSHGSTPEILEAYLRVNWFTQKAFEVATLFTGAGLGKAAGKAA
CEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
AKKLFKFLADKAAGKLVKQFLERLVVKAADTAANKVLHFGIDALSLPCKGRKPYYINLIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEEEE
FGGQCGTPASLR
ECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA