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The map label for this gene is 28572684

Identifier: 28572684

GI number: 28572684

Start: 572506

End: 573183

Strand: Reverse

Name: 28572684

Synonym: TW535

Alternate gene names: NA

Gene position: 573183-572506 (Counterclockwise)

Preceding gene: 28572685

Following gene: 28572683

Centisome position: 61.9

GC content: 43.22

Gene sequence:

>678_bases
TTGTCTTCTGCGCAAGAAAAAACTGATCGTCCATTTACCATTGGTCAGGTTTTGTCCATCTTGAAAAAAGAATTTCCGGA
TGTCACATCATCTAAACTGCGGTTTTTAGAAGAGCAGAAGCTTATTATTCCGCCCAGGACATCTGCCGGCTACCGGGTGT
TTTATCCTGCTGATGTCAAAAGAATAAGGGTTATACTGCGGATGCAGCGCGACGAATATCTTCCGCTCAAGATTATTCGC
TCCCGCCTTGATTCGGCAAATATTGCTCTTTCGACTACTTCGGGTGTCTCTATGCGGCGTGAGGAGCTTGTATCTCGTGC
TGGTGTTCCGGCAACTCTTTTTACAGAGGCCGTAACCCATTCGCTTATCAAGCCATCAGAGTGTTACGGGCAGGATACTC
TCAAACTATTGGTCTGCCTTGCAGCTCTGAAGAAAATGGGGATTTCACCCAAGCATCTGACATTTCTTAAAAAAACCGTT
GATAAAGAGTACCTGCTTTCTCATAACGCTGTTCTTCCGCTGCGTGTAAGGAAGGATGAGGGGTTGCTTGAACATTCATT
TTGTGAGCTCCTCAATAATATGCAGGTAATTCAGGCAATACTGGTATCTCAGGTTAAAAAAGATTTTTTACAAAGTTCTA
AATCTAAGATTGATCCAAAAGATTTGGCCAGTTCTTAA

Upstream 100 bases:

>100_bases
AAAGAGTTGACAATGCTGTTCTGTGTGATGGCTTCGAGGTGCAAATTGGTAAGTTTCATCTAACCTTTTTTACCTCAAAG
GCCCTGAAAGGCTAGGTATT

Downstream 100 bases:

>100_bases
GCTAAAGTTTCTACAGGATCTTTTGTAAATCGAGGAGTTGCTTTGTCTGGAAATCTTGCTGAGGCGCGGCAGAGGGCTGG
GTACAGAGGCGTTGTTGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MSSAQEKTDRPFTIGQVLSILKKEFPDVTSSKLRFLEEQKLIIPPRTSAGYRVFYPADVKRIRVILRMQRDEYLPLKIIR
SRLDSANIALSTTSGVSMRREELVSRAGVPATLFTEAVTHSLIKPSECYGQDTLKLLVCLAALKKMGISPKHLTFLKKTV
DKEYLLSHNAVLPLRVRKDEGLLEHSFCELLNNMQVIQAILVSQVKKDFLQSSKSKIDPKDLASS

Sequences:

>Translated_225_residues
MSSAQEKTDRPFTIGQVLSILKKEFPDVTSSKLRFLEEQKLIIPPRTSAGYRVFYPADVKRIRVILRMQRDEYLPLKIIR
SRLDSANIALSTTSGVSMRREELVSRAGVPATLFTEAVTHSLIKPSECYGQDTLKLLVCLAALKKMGISPKHLTFLKKTV
DKEYLLSHNAVLPLRVRKDEGLLEHSFCELLNNMQVIQAILVSQVKKDFLQSSKSKIDPKDLASS
>Mature_224_residues
SSAQEKTDRPFTIGQVLSILKKEFPDVTSSKLRFLEEQKLIIPPRTSAGYRVFYPADVKRIRVILRMQRDEYLPLKIIRS
RLDSANIALSTTSGVSMRREELVSRAGVPATLFTEAVTHSLIKPSECYGQDTLKLLVCLAALKKMGISPKHLTFLKKTVD
KEYLLSHNAVLPLRVRKDEGLLEHSFCELLNNMQVIQAILVSQVKKDFLQSSKSKIDPKDLASS

Specific function: Unknown

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 25400; Mature: 25269

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSAQEKTDRPFTIGQVLSILKKEFPDVTSSKLRFLEEQKLIIPPRTSAGYRVFYPADVK
CCCCCHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCEEECCCCCCCEEEEECHHHH
RIRVILRMQRDEYLPLKIIRSRLDSANIALSTTSGVSMRREELVSRAGVPATLFTEAVTH
HHHHHHHHHCCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHH
SLIKPSECYGQDTLKLLVCLAALKKMGISPKHLTFLKKTVDKEYLLSHNAVLPLRVRKDE
HHCCCHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
GLLEHSFCELLNNMQVIQAILVSQVKKDFLQSSKSKIDPKDLASS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCC
>Mature Secondary Structure 
SSAQEKTDRPFTIGQVLSILKKEFPDVTSSKLRFLEEQKLIIPPRTSAGYRVFYPADVK
CCCCHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCEEECCCCCCCEEEEECHHHH
RIRVILRMQRDEYLPLKIIRSRLDSANIALSTTSGVSMRREELVSRAGVPATLFTEAVTH
HHHHHHHHHCCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHH
SLIKPSECYGQDTLKLLVCLAALKKMGISPKHLTFLKKTVDKEYLLSHNAVLPLRVRKDE
HHCCCHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
GLLEHSFCELLNNMQVIQAILVSQVKKDFLQSSKSKIDPKDLASS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]