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The map label for this gene is ctaF [H]

Identifier: 28572674

GI number: 28572674

Start: 564534

End: 564953

Strand: Reverse

Name: ctaF [H]

Synonym: TW525

Alternate gene names: 28572674

Gene position: 564953-564534 (Counterclockwise)

Preceding gene: 28572675

Following gene: 28572673

Centisome position: 61.01

GC content: 44.05

Gene sequence:

>420_bases
ATGGGCCAATCGATAAAGCTTTTTTTCTGGCTTGGGGTTTTTTTCATTTTTGTTTGTCTTGTTTATACCGGTGCGCATAT
TCTTCTTGGCTTGGAGATTGAATGGACCGGGAGTGTGTCTTTTTTTGTTGCATGTATTCTTTTCTTCATGGTTTCTGCCT
ATTTGTCCAGCATAAACAAAAGAATTGCTACCCTCCCGGAAGACAAGGAAGATGCCGATATTGATGATGCACCACCGGAT
ATTGGTGTATTTGCGCCATGGAGCTGGTGGCCAGCTGTTCTATCGGTTTTTCTGGGGATAGCTGCGATCGGTTTTTCTGA
ACTGCGCGGAATGTGGCTGGTTATGTTTACTGCGCCGTTTGTCTTATTGTCGATTGTTGGTTTTGTTTATGAACATGTCA
GGGGTAGGTGGATCCGTTAG

Upstream 100 bases:

>100_bases
CAAGGCATAACTTTAGATCCATACCAAAAATAAGATCTGAGCGGCCTGCATTTGATCTTCATCATCCTGATGTGCGGTAA
GTGTTAGGGGGAATTGTTAC

Downstream 100 bases:

>100_bases
GAGCCCTGTTTATGGCGTCTTGTTTCTTTGGGCATTTGAGAAAGGCTTTGCGCTGTCCTGATATTTTTCCCGATGTAGAA
TTGATCACGTGAAGAAAGCG

Product: integral membrane protein

Products: NA

Alternate protein names: Cytochrome aa3 subunit 4; Cytochrome c oxidase polypeptide IV [H]

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MGQSIKLFFWLGVFFIFVCLVYTGAHILLGLEIEWTGSVSFFVACILFFMVSAYLSSINKRIATLPEDKEDADIDDAPPD
IGVFAPWSWWPAVLSVFLGIAAIGFSELRGMWLVMFTAPFVLLSIVGFVYEHVRGRWIR

Sequences:

>Translated_139_residues
MGQSIKLFFWLGVFFIFVCLVYTGAHILLGLEIEWTGSVSFFVACILFFMVSAYLSSINKRIATLPEDKEDADIDDAPPD
IGVFAPWSWWPAVLSVFLGIAAIGFSELRGMWLVMFTAPFVLLSIVGFVYEHVRGRWIR
>Mature_138_residues
GQSIKLFFWLGVFFIFVCLVYTGAHILLGLEIEWTGSVSFFVACILFFMVSAYLSSINKRIATLPEDKEDADIDDAPPDI
GVFAPWSWWPAVLSVFLGIAAIGFSELRGMWLVMFTAPFVLLSIVGFVYEHVRGRWIR

Specific function: Part of cytochrome c oxidase, its function is unknown [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase bacterial subunit CtaF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021050 [H]

Pfam domain/function: PF12270 Cyt_c_ox_IV [H]

EC number: =1.9.3.1 [H]

Molecular weight: Translated: 15721; Mature: 15590

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQSIKLFFWLGVFFIFVCLVYTGAHILLGLEIEWTGSVSFFVACILFFMVSAYLSSINK
CCCCHHHHHHHHHHHHHHHHHHHCHHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
RIATLPEDKEDADIDDAPPDIGVFAPWSWWPAVLSVFLGIAAIGFSELRGMWLVMFTAPF
HHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLLSIVGFVYEHVRGRWIR
HHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
GQSIKLFFWLGVFFIFVCLVYTGAHILLGLEIEWTGSVSFFVACILFFMVSAYLSSINK
CCCHHHHHHHHHHHHHHHHHHHCHHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
RIATLPEDKEDADIDDAPPDIGVFAPWSWWPAVLSVFLGIAAIGFSELRGMWLVMFTAPF
HHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLLSIVGFVYEHVRGRWIR
HHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11572948; 12692562 [H]