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The map label for this gene is rsmE [H]

Identifier: 28572640

GI number: 28572640

Start: 528610

End: 529317

Strand: Reverse

Name: rsmE [H]

Synonym: TW491

Alternate gene names: 28572640

Gene position: 529317-528610 (Counterclockwise)

Preceding gene: 28572641

Following gene: 28572639

Centisome position: 57.17

GC content: 48.02

Gene sequence:

>708_bases
ATGAGCGGATTTTTTATTGCTGAGAACCTTTCTGAGCTATCAGAAGGTGACACGGTTTTTCTATCAGATAGGGAACAGAG
GCATGCCTGTCTTTCGCGAAGAATAAGAGTTGGCGAGGAAATTGGTCTAACAGACACAATGGGTCGCACAGCGAATGCCC
GAGTCACCGTGTCAAGCCAGCCAGGAACCATTACCGCAAGGATAATGAATCTTACTCTTCATAAGCCCAATCGCGTCACC
GTTTCCTTGCTTCAAGCTCTGTGCAGACGCGCAAGCGCAGAATCTGCTGTGCGGAGCGCTGTTGAGCTCGGTGTTGACAG
GATAGTGCCCTGGAAATCAGATCGAAGTTTCAATTCATCGAGTCGCAGGTGGTCGAGTATTGCACGTGAGGCTGCCAAGC
AGTCACGGCGTGCATGGTTTCCCGTTGTGAAGGCTGATATACCATCAGAACGGCTTGTCGAAGAAATTGGAGACTCTCTT
GCCATCATTTTAGATCCAGGATCCAATACAAGACTTAGCTCTCTCGGGAATTTGTTTCTACAGAGAAAATCAGTTTTTCT
TCTAATTGGCCCTGAAGGTGGGATTACCAGGGAAGAGATTTCCACAATACCGGGAATTTGCTGTAGCTTGGGAATTGAGA
CTCTTAAATCCTCCACAGCGAGTGTTGCGGCCTTGTCGCTTGTTAATTTTTTCCTGGGGCGATGGTAA

Upstream 100 bases:

>100_bases
ACCAAAACCGAAGCTTGCAAAGCGTACATCAGGATTTTTTTCGTGGCTGAAAAATAAGTTTACATAAGATACCTTTCTAA
AAAATTCTGTCGGTGTTATC

Downstream 100 bases:

>100_bases
TTTTCCTGCCTCATCGGGTATTATCATAGCCAGATATGACGTCTGTTTTTACAAGAATCATAAATCGTGAGGTTCCGGCA
GAAATTCTTTTTGAAGATGA

Product: 16S ribosomal RNA methyltransferase RsmE

Products: NA

Alternate protein names: 16S rRNA m3U1498 methyltransferase [H]

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MSGFFIAENLSELSEGDTVFLSDREQRHACLSRRIRVGEEIGLTDTMGRTANARVTVSSQPGTITARIMNLTLHKPNRVT
VSLLQALCRRASAESAVRSAVELGVDRIVPWKSDRSFNSSSRRWSSIAREAAKQSRRAWFPVVKADIPSERLVEEIGDSL
AIILDPGSNTRLSSLGNLFLQRKSVFLLIGPEGGITREEISTIPGICCSLGIETLKSSTASVAALSLVNFFLGRW

Sequences:

>Translated_235_residues
MSGFFIAENLSELSEGDTVFLSDREQRHACLSRRIRVGEEIGLTDTMGRTANARVTVSSQPGTITARIMNLTLHKPNRVT
VSLLQALCRRASAESAVRSAVELGVDRIVPWKSDRSFNSSSRRWSSIAREAAKQSRRAWFPVVKADIPSERLVEEIGDSL
AIILDPGSNTRLSSLGNLFLQRKSVFLLIGPEGGITREEISTIPGICCSLGIETLKSSTASVAALSLVNFFLGRW
>Mature_234_residues
SGFFIAENLSELSEGDTVFLSDREQRHACLSRRIRVGEEIGLTDTMGRTANARVTVSSQPGTITARIMNLTLHKPNRVTV
SLLQALCRRASAESAVRSAVELGVDRIVPWKSDRSFNSSSRRWSSIAREAAKQSRRAWFPVVKADIPSERLVEEIGDSLA
IILDPGSNTRLSSLGNLFLQRKSVFLLIGPEGGITREEISTIPGICCSLGIETLKSSTASVAALSLVNFFLGRW

Specific function: Specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [H]

COG id: COG1385

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase RsmE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015947
- InterPro:   IPR006700 [H]

Pfam domain/function: PF04452 Methyltrans_RNA [H]

EC number: =2.1.1.193 [H]

Molecular weight: Translated: 25720; Mature: 25589

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGFFIAENLSELSEGDTVFLSDREQRHACLSRRIRVGEEIGLTDTMGRTANARVTVSSQ
CCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECC
PGTITARIMNLTLHKPNRVTVSLLQALCRRASAESAVRSAVELGVDRIVPWKSDRSFNSS
CCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
SRRWSSIAREAAKQSRRAWFPVVKADIPSERLVEEIGDSLAIILDPGSNTRLSSLGNLFL
HHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH
QRKSVFLLIGPEGGITREEISTIPGICCSLGIETLKSSTASVAALSLVNFFLGRW
HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SGFFIAENLSELSEGDTVFLSDREQRHACLSRRIRVGEEIGLTDTMGRTANARVTVSSQ
CCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECC
PGTITARIMNLTLHKPNRVTVSLLQALCRRASAESAVRSAVELGVDRIVPWKSDRSFNSS
CCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
SRRWSSIAREAAKQSRRAWFPVVKADIPSERLVEEIGDSLAIILDPGSNTRLSSLGNLFL
HHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH
QRKSVFLLIGPEGGITREEISTIPGICCSLGIETLKSSTASVAALSLVNFFLGRW
HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]