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The map label for this gene is ybeY [C]

Identifier: 28572638

GI number: 28572638

Start: 527739

End: 528254

Strand: Reverse

Name: ybeY [C]

Synonym: TW489

Alternate gene names: 28572638

Gene position: 528254-527739 (Counterclockwise)

Preceding gene: 28572639

Following gene: 28572637

Centisome position: 57.05

GC content: 43.6

Gene sequence:

>516_bases
GTGACAGGTTTGCTGTATCTGCAGAACAGCTCGGGGTACAACGATTGTTATTTTAAAACCGAATCTCTAGTTGATTTTCT
CTACCGTACGTTATTCATAGACAAGGGCTCATATCTTGGTGTGAGTTTTATAACTGCAGCAGAAATGCGTGACTTAAAGA
TTAAGCATTTTGGGGTGAATGAGGATTCCGATGTTTTAAGTTTTCCAATCGATGAAATAGCCCCTGGCAGTGAAAATTCA
CTTGTCTATGGTGTCCTGGGTGATATCGTCGTCTGTCCAGAGACCGTAATGCGCCAGGCTGTGCGGCATCCATTTGAGCA
TGAAATCTATTTGCTCGTGGTACATGGTTTTTTGCATTTGCTCGGGTTTGATCACTCTGATGCGCCCTCTAAAAAGGAAA
TGTTTTCTCTCCAGGCAAAGCTCATAGAGGATTTTTTTGCCCTGGAGAATCTTGGAACGCCTTCTGAAGAGATTACAATA
ACCCCAGACCTTAGGCCTTCGCTTGGTCGTATCTAG

Upstream 100 bases:

>100_bases
TTGGCAGTCAGTTTAGGCTCATTTTCAATACCGGGGCCCTTGTCGGGCAGACTGTTTTTCATGTTCATGCCCACATATTG
TCGGGTGAAGCACTGGGTGA

Downstream 100 bases:

>100_bases
ATCCCCCGGAGGCTATAGATCGGGGATAATTACACTCGTTGGCAGGCCAAATGTTGGAAAGTCGACGCTTATAAATTCTC
TTGTTGGAGAACATCTTTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MTGLLYLQNSSGYNDCYFKTESLVDFLYRTLFIDKGSYLGVSFITAAEMRDLKIKHFGVNEDSDVLSFPIDEIAPGSENS
LVYGVLGDIVVCPETVMRQAVRHPFEHEIYLLVVHGFLHLLGFDHSDAPSKKEMFSLQAKLIEDFFALENLGTPSEEITI
TPDLRPSLGRI

Sequences:

>Translated_171_residues
MTGLLYLQNSSGYNDCYFKTESLVDFLYRTLFIDKGSYLGVSFITAAEMRDLKIKHFGVNEDSDVLSFPIDEIAPGSENS
LVYGVLGDIVVCPETVMRQAVRHPFEHEIYLLVVHGFLHLLGFDHSDAPSKKEMFSLQAKLIEDFFALENLGTPSEEITI
TPDLRPSLGRI
>Mature_170_residues
TGLLYLQNSSGYNDCYFKTESLVDFLYRTLFIDKGSYLGVSFITAAEMRDLKIKHFGVNEDSDVLSFPIDEIAPGSENSL
VYGVLGDIVVCPETVMRQAVRHPFEHEIYLLVVHGFLHLLGFDHSDAPSKKEMFSLQAKLIEDFFALENLGTPSEEITIT
PDLRPSLGRI

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=91, Percent_Identity=39.5604395604396, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_TROW8 (Q83HN7)

Other databases:

- EMBL:   BX251411
- RefSeq:   NP_789418.1
- ProteinModelPortal:   Q83HN7
- SMR:   Q83HN7
- STRING:   Q83HN7
- GeneID:   1064693
- GenomeReviews:   BX072543_GR
- KEGG:   tws:TW489
- eggNOG:   COG0319
- HOGENOM:   HBG732581
- OMA:   ELNDSEC
- PhylomeDB:   Q83HN7
- ProtClustDB:   CLSK229835
- BioCyc:   TWHI218496:TW0463-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 19240; Mature: 19109

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGLLYLQNSSGYNDCYFKTESLVDFLYRTLFIDKGSYLGVSFITAAEMRDLKIKHFGVN
CCEEEEEECCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCEEEEEECCC
EDSDVLSFPIDEIAPGSENSLVYGVLGDIVVCPETVMRQAVRHPFEHEIYLLVVHGFLHL
CCCCEEECCHHHCCCCCCCCEEEEECCCEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHH
LGFDHSDAPSKKEMFSLQAKLIEDFFALENLGTPSEEITITPDLRPSLGRI
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCC
>Mature Secondary Structure 
TGLLYLQNSSGYNDCYFKTESLVDFLYRTLFIDKGSYLGVSFITAAEMRDLKIKHFGVN
CEEEEEECCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCEEEEEECCC
EDSDVLSFPIDEIAPGSENSLVYGVLGDIVVCPETVMRQAVRHPFEHEIYLLVVHGFLHL
CCCCEEECCHHHCCCCCCCCEEEEECCCEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHH
LGFDHSDAPSKKEMFSLQAKLIEDFFALENLGTPSEEITITPDLRPSLGRI
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12606174