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The map label for this gene is rpoZ

Identifier: 28572560

GI number: 28572560

Start: 445147

End: 445404

Strand: Direct

Name: rpoZ

Synonym: TW407

Alternate gene names: 28572560

Gene position: 445147-445404 (Clockwise)

Preceding gene: 28572559

Following gene: 28572561

Centisome position: 48.08

GC content: 45.74

Gene sequence:

>258_bases
ATGGAAGAAGATCGCGGAATAGCAGATCCACCTCTTGATTCTTTGCTCAGCAGGTCGGGTTCAAAATATGGCCTTGTGAT
CTATGCGGCTAAACGTGCACGGCAGATAGATCAGTACTATATTGACCTGCATGAAGGGTCATTTTATGCTCATGTTGGGC
CACTTGTTTCTGTTGATGCTGATGATAAATCCCTTACAGTCGCAATGCGTGAGATTGCCGAGGATAAACTCGATCTTAAG
TCTTCTGCAGCCGAGTGA

Upstream 100 bases:

>100_bases
TTGCTAGAGTTCTGTTGTTTACAGCATTGTTTTGGGTTAGTATATTTGCTGTTCGGTTTATTTGGAAAATGTAAATACTT
TTCTGGAAGAGGTTTTGTAT

Downstream 100 bases:

>100_bases
TGCAAAATGCGATCGGGCGCATTTTCTTGGGCGTATGTGGGTCCATCTCAGCATACAAGTCTGTTTATCTTGCCAGATTA
TTCGTAAAAGAGGGCTACGA

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 85; Mature: 85

Protein sequence:

>85_residues
MEEDRGIADPPLDSLLSRSGSKYGLVIYAAKRARQIDQYYIDLHEGSFYAHVGPLVSVDADDKSLTVAMREIAEDKLDLK
SSAAE

Sequences:

>Translated_85_residues
MEEDRGIADPPLDSLLSRSGSKYGLVIYAAKRARQIDQYYIDLHEGSFYAHVGPLVSVDADDKSLTVAMREIAEDKLDLK
SSAAE
>Mature_85_residues
MEEDRGIADPPLDSLLSRSGSKYGLVIYAAKRARQIDQYYIDLHEGSFYAHVGPLVSVDADDKSLTVAMREIAEDKLDLK
SSAAE

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_TROWT (Q820D5)

Other databases:

- EMBL:   AE014184
- RefSeq:   NP_787490.1
- STRING:   Q820D5
- GeneID:   1089477
- GenomeReviews:   AE014184_GR
- KEGG:   twh:TWT362
- eggNOG:   COG1758
- HOGENOM:   HBG742204
- OMA:   VIFAAKR
- ProtClustDB:   PRK00392
- BioCyc:   TWHI203267:TW362-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 9374; Mature: 9374

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEDRGIADPPLDSLLSRSGSKYGLVIYAAKRARQIDQYYIDLHEGSFYAHVGPLVSVDA
CCCCCCCCCCCHHHHHHCCCCCCEEEEEECHHHHHHHHHEEEECCCCEEEECCCEEEECC
DDKSLTVAMREIAEDKLDLKSSAAE
CCCHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MEEDRGIADPPLDSLLSRSGSKYGLVIYAAKRARQIDQYYIDLHEGSFYAHVGPLVSVDA
CCCCCCCCCCCHHHHHHCCCCCCEEEEEECHHHHHHHHHEEEECCCCEEEECCCEEEECC
DDKSLTVAMREIAEDKLDLKSSAAE
CCCHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12902375