| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is 28572525
Identifier: 28572525
GI number: 28572525
Start: 405395
End: 406006
Strand: Direct
Name: 28572525
Synonym: TW372
Alternate gene names: NA
Gene position: 405395-406006 (Clockwise)
Preceding gene: 28572523
Following gene: 28572526
Centisome position: 43.78
GC content: 49.51
Gene sequence:
>612_bases ATGCTTGTGTGCGTGAGTTCTTCGCCTGTTCGTGTTTGGCTTGATCCTTTTTGTCCCTGGGCTTGGCTGGTTGCCAATTG GCTCGAGGAGGTATCTCTGCATCGGAAGATTGATGTTGATCAAAGGACTATGTCATTGGCTCTTTTGCCTGGGAACAGTG CCCGTCGAAATGAACCATTCATGGAAGCGAGTCTGGAAGCTACCCTTGTTTTGACGGCCGTGGCCCAGGAACTCGGCTCG GGCGCTTCTAAGCGTCTCTATATGTCACTTGGGAAAAAGATTCACAAGGAAGAATTCAATCTGGGAAATACTGCAACGCT TATTACAGATTCTCTTTCTGACACCGGGTTACCCGAAGATTTTTCTAGACGGTCTTCAGAGTATTACAATCAGCTGCAGG AGAGCACATCTGCCGCGCTAAGCCTTGTTGGAGACCAGTGCGGCACTCCAGTTGTCAGTGTTGGGGATGTTGCTTTCTTT GGTCCCGTTATTTCGCGCGTGCCACGTGGCGAGGATGCAGTTAGGTTTTTCGATAGCATCGTTTCGGTTTGTTCTTGGAG TGGATTCTATGAGCTCAAGCGTACTCGGAGTGAAGGTCCGCAAATAGACTGA
Upstream 100 bases:
>100_bases ACCCGTTTTCTGCATGGATTGTATAAAAATCAAATCTTGGATACCCACGGCCTTATAAAGACTCCAGGTCACAAGTTTGT TTTATAGGTAACTAGCATAT
Downstream 100 bases:
>100_bases CATGAGCGGCAGGGTTCATCTGGCTACCGATCATGCCGGTTATGAGTTCTCTAAAGGTCTCTTGAACTTTCTTGCTGATG AGCATTATCAGGTTGTCCAT
Product: hypothetical protein
Products: NA
Alternate protein names: DsbA Oxidoreductase; DSBA-Like Thioredoxin; DSBA-Like Thioredoxin Domain-Containing Protein; Dsba Oxidoreductase; DSBA Oxidoreductase Family Protein; 2-Hydroxychromene-2-Carboxylate Isomerase; Signal Peptide-Containing Protein; Signal Peptide
Number of amino acids: Translated: 203; Mature: 203
Protein sequence:
>203_residues MLVCVSSSPVRVWLDPFCPWAWLVANWLEEVSLHRKIDVDQRTMSLALLPGNSARRNEPFMEASLEATLVLTAVAQELGS GASKRLYMSLGKKIHKEEFNLGNTATLITDSLSDTGLPEDFSRRSSEYYNQLQESTSAALSLVGDQCGTPVVSVGDVAFF GPVISRVPRGEDAVRFFDSIVSVCSWSGFYELKRTRSEGPQID
Sequences:
>Translated_203_residues MLVCVSSSPVRVWLDPFCPWAWLVANWLEEVSLHRKIDVDQRTMSLALLPGNSARRNEPFMEASLEATLVLTAVAQELGS GASKRLYMSLGKKIHKEEFNLGNTATLITDSLSDTGLPEDFSRRSSEYYNQLQESTSAALSLVGDQCGTPVVSVGDVAFF GPVISRVPRGEDAVRFFDSIVSVCSWSGFYELKRTRSEGPQID >Mature_203_residues MLVCVSSSPVRVWLDPFCPWAWLVANWLEEVSLHRKIDVDQRTMSLALLPGNSARRNEPFMEASLEATLVLTAVAQELGS GASKRLYMSLGKKIHKEEFNLGNTATLITDSLSDTGLPEDFSRRSSEYYNQLQESTSAALSLVGDQCGTPVVSVGDVAFF GPVISRVPRGEDAVRFFDSIVSVCSWSGFYELKRTRSEGPQID
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22413; Mature: 22413
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLVCVSSSPVRVWLDPFCPWAWLVANWLEEVSLHRKIDVDQRTMSLALLPGNSARRNEPF CEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCH MEASLEATLVLTAVAQELGSGASKRLYMSLGKKIHKEEFNLGNTATLITDSLSDTGLPED HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHH FSRRSSEYYNQLQESTSAALSLVGDQCGTPVVSVGDVAFFGPVISRVPRGEDAVRFFDSI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHCCCCHHHHHHHHHH VSVCSWSGFYELKRTRSEGPQID HHHHCCCCHHHHHHHHCCCCCCC >Mature Secondary Structure MLVCVSSSPVRVWLDPFCPWAWLVANWLEEVSLHRKIDVDQRTMSLALLPGNSARRNEPF CEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCH MEASLEATLVLTAVAQELGSGASKRLYMSLGKKIHKEEFNLGNTATLITDSLSDTGLPED HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHH FSRRSSEYYNQLQESTSAALSLVGDQCGTPVVSVGDVAFFGPVISRVPRGEDAVRFFDSI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHCCCCHHHHHHHHHH VSVCSWSGFYELKRTRSEGPQID HHHHCCCCHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA