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The map label for this gene is yrdC [C]

Identifier: 28572489

GI number: 28572489

Start: 367483

End: 368160

Strand: Direct

Name: yrdC [C]

Synonym: TW335

Alternate gene names: 28572489

Gene position: 367483-368160 (Clockwise)

Preceding gene: 28572488

Following gene: 28572490

Centisome position: 39.69

GC content: 49.26

Gene sequence:

>678_bases
ATGCCACAGACTTTTAACTGCAACAAAGATCCACTGTCCGCTTTTCGCGCCGCCAAAAGGTCGATTTCATCGGGTGGTGT
TATTGTTGTACCAACTGATACCGTGTATGGCCTTGCGGCTGACGCGTTTCAGCCTGAAGCGGTTGGTAGGCTTCTGGAAA
TAAAAGGCCGCACCGCGGCTCCTCCCGTTTTGGTTGGCAGTATAGAAACATTTCAAGCGATTGTTGATGTGCTTCCGGAG
CCGGCATTGGCTCTTGCCAAGCGTTTCTGGCCTGGCCCTCTCACACTTGTTCTTCGTACAAGACCTGGTTTGCTGTGGGG
TGACACGGTTGCAGTACGGATTCCTCGGCATAGTTTTTTGTTACAACTGCTGGATGAAATAGGCCCTTTGGCGGTTTCAT
CGGCGAATATATCTGGACGGCGACCAGCTCTTTCAGTTCGAAGTGCTAGGGGTTCTCTTAGGGATAAGCCTGCTATGTAT
ATTGACGGTGACCGAATTGATAATCCAGATCGAGTGCCCTCTTCAATAGTTGATTTAACAGATTTTTGTGAAGATTCAGC
CGGTCGAATTTTTGAAGGTGTGTCTCCTAAAACTGCCCAGCCACGCCTTCTGCGCGATGGCGCTATTCCGTGGAAATCTC
TAGAAAAAGCCATGCAAATGAAGCTTGTGAAGCAGTGA

Upstream 100 bases:

>100_bases
TCTTAACGATAGGCTTCGCTTTTCGTCTGCAAAGATCATTAGGCTGGATTAGCCGCATTGAGATCCATAAATTACAGTTT
TCAATTAGGATGGAACAGTA

Downstream 100 bases:

>100_bases
TCTGACATTACAGAGAACAATACGGTTGTGTGGGGATGAATAGCATTTGATTGTTTATCTCTCTGTGGCCCTTTTTGCGG
CGCTTGTTACTGCTACTTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MPQTFNCNKDPLSAFRAAKRSISSGGVIVVPTDTVYGLAADAFQPEAVGRLLEIKGRTAAPPVLVGSIETFQAIVDVLPE
PALALAKRFWPGPLTLVLRTRPGLLWGDTVAVRIPRHSFLLQLLDEIGPLAVSSANISGRRPALSVRSARGSLRDKPAMY
IDGDRIDNPDRVPSSIVDLTDFCEDSAGRIFEGVSPKTAQPRLLRDGAIPWKSLEKAMQMKLVKQ

Sequences:

>Translated_225_residues
MPQTFNCNKDPLSAFRAAKRSISSGGVIVVPTDTVYGLAADAFQPEAVGRLLEIKGRTAAPPVLVGSIETFQAIVDVLPE
PALALAKRFWPGPLTLVLRTRPGLLWGDTVAVRIPRHSFLLQLLDEIGPLAVSSANISGRRPALSVRSARGSLRDKPAMY
IDGDRIDNPDRVPSSIVDLTDFCEDSAGRIFEGVSPKTAQPRLLRDGAIPWKSLEKAMQMKLVKQ
>Mature_224_residues
PQTFNCNKDPLSAFRAAKRSISSGGVIVVPTDTVYGLAADAFQPEAVGRLLEIKGRTAAPPVLVGSIETFQAIVDVLPEP
ALALAKRFWPGPLTLVLRTRPGLLWGDTVAVRIPRHSFLLQLLDEIGPLAVSSANISGRRPALSVRSARGSLRDKPAMYI
DGDRIDNPDRVPSSIVDLTDFCEDSAGRIFEGVSPKTAQPRLLRDGAIPWKSLEKAMQMKLVKQ

Specific function: Binds Preferentially To Double-Stranded RNA. [C]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=180, Percent_Identity=35, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI78707274, Length=185, Percent_Identity=32.972972972973, Blast_Score=72, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 24377; Mature: 24245

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQTFNCNKDPLSAFRAAKRSISSGGVIVVPTDTVYGLAADAFQPEAVGRLLEIKGRTAA
CCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCCCHHHHHHHHHCCCCCCC
PPVLVGSIETFQAIVDVLPEPALALAKRFWPGPLTLVLRTRPGLLWGDTVAVRIPRHSFL
CCEEECCHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEECCCCEEECCEEEEEECHHHHH
LQLLDEIGPLAVSSANISGRRPALSVRSARGSLRDKPAMYIDGDRIDNPDRVPSSIVDLT
HHHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCHHHHHHHH
DFCEDSAGRIFEGVSPKTAQPRLLRDGAIPWKSLEKAMQMKLVKQ
HHHCCCCCHHCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PQTFNCNKDPLSAFRAAKRSISSGGVIVVPTDTVYGLAADAFQPEAVGRLLEIKGRTAA
CCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCCCHHHHHHHHHCCCCCCC
PPVLVGSIETFQAIVDVLPEPALALAKRFWPGPLTLVLRTRPGLLWGDTVAVRIPRHSFL
CCEEECCHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEECCCCEEECCEEEEEECHHHHH
LQLLDEIGPLAVSSANISGRRPALSVRSARGSLRDKPAMYIDGDRIDNPDRVPSSIVDLT
HHHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCHHHHHHHH
DFCEDSAGRIFEGVSPKTAQPRLLRDGAIPWKSLEKAMQMKLVKQ
HHHCCCCCHHCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]