Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is thrC [H]

Identifier: 28572484

GI number: 28572484

Start: 361919

End: 362971

Strand: Direct

Name: thrC [H]

Synonym: TW330

Alternate gene names: 28572484

Gene position: 361919-362971 (Clockwise)

Preceding gene: 28572483

Following gene: 28572485

Centisome position: 39.09

GC content: 48.15

Gene sequence:

>1053_bases
ATGTATTTTAGAGGGATTATCAACGAGTACAGATCACGCCTGGGGCTTGACGCGGACCTTAAGGTTGTTACCCTTGGTGA
GGGTAATACCCCCCTTGTGTATTCAGAAGCTCTGTCGAGCCTAACTGCCTCTTCTGTGTGGTTAAAGTTTGATGGCGCTA
ACCCAACTGGGTCGTTCAAAGATAGAGGTATGACAGTTGCCGTATCAAAAGCTGTGAATTCGGGCGTGCGCACGGTTATT
TGCGCATCAACAGGTAACACTTCTGCTTCAGCCGCAGCTTATTCCGCCGCTGCAGGTATAGAGTGCGTTGTTCTCATCCC
CGAGGGCTTCGTAAGTCATGGTAAGTTGTGCCAGGCTGTCGCACACGGCGCGAGAGTTTTGCAGATTAGAGGAAATTTTG
ATTCATGCCTCAGAGTGGCTAGGGAGCTCGCAGAAATTCACCCCGTACACCTTGTAAACTCAATAAATCCAGACCGTATA
AGCGGACAAAAAACTGCTGCGTTTGAGATAATTGATGCCCTGGGGGATGCGCCAGATTACCATTATCTTCCTGTTGGTAA
TGCTGGTAATTACACGGCATACTATCTTGGATACAGTGAAGAGAAAGTTCGTGGAAACAGTACCCATATTCCGCGTATTT
TCGGCTTTCAGGCAAGTGGTGCTGCTCCGATTGTCTCAGGGCATATTGTTGAAAATCCGCAGTCAATAGCAACTGCTATT
CGTATTGGCAATCCGGCTTCTTGGAAACAGGCTCTGCATGCCCAACACGCGTGTAATGGTTATTTTGGGAGTATAGATGA
TTCAGGCATCCTCGAGGCACAGAAATTATTGGCACGCACTTGTGGGTTATTTGTTGAACCGGCCAGTGCGATAAGCGTTG
CAGGCCTTCTTGCCTCAAAACCCCCAGAGGGCAGTAGTGTTGTGTGCACTCTAACTGGCCATGGATTGAAGGATCAACAG
CTGGCCTTTCGTAAATCTGATGGCACAGAGTATTCCCTTCCGTCATTACCCGGTGATTCGCAATCAATAGCTTCATATTT
GAATCTCGCGTGA

Upstream 100 bases:

>100_bases
AAATTGCTCGCATGTTGTGAGTATAGTAAGTGTTATGCGGATTGAACAGGGCGGTTTTGAAGAAACTGGCCTTGCGTTAC
CGGAAACGGCGTGATGCACG

Downstream 100 bases:

>100_bases
TGCCGCCTGATGCATCTGTTGCGCAAAATCACGGGAAGCAGTGAGATTGGAGGGTTGTAGGAATTTGAGTTTCACAGTTA
AAGTCCCCGCGACAAGTGCA

Product: threonine synthase

Products: NA

Alternate protein names: TS [H]

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MYFRGIINEYRSRLGLDADLKVVTLGEGNTPLVYSEALSSLTASSVWLKFDGANPTGSFKDRGMTVAVSKAVNSGVRTVI
CASTGNTSASAAAYSAAAGIECVVLIPEGFVSHGKLCQAVAHGARVLQIRGNFDSCLRVARELAEIHPVHLVNSINPDRI
SGQKTAAFEIIDALGDAPDYHYLPVGNAGNYTAYYLGYSEEKVRGNSTHIPRIFGFQASGAAPIVSGHIVENPQSIATAI
RIGNPASWKQALHAQHACNGYFGSIDDSGILEAQKLLARTCGLFVEPASAISVAGLLASKPPEGSSVVCTLTGHGLKDQQ
LAFRKSDGTEYSLPSLPGDSQSIASYLNLA

Sequences:

>Translated_350_residues
MYFRGIINEYRSRLGLDADLKVVTLGEGNTPLVYSEALSSLTASSVWLKFDGANPTGSFKDRGMTVAVSKAVNSGVRTVI
CASTGNTSASAAAYSAAAGIECVVLIPEGFVSHGKLCQAVAHGARVLQIRGNFDSCLRVARELAEIHPVHLVNSINPDRI
SGQKTAAFEIIDALGDAPDYHYLPVGNAGNYTAYYLGYSEEKVRGNSTHIPRIFGFQASGAAPIVSGHIVENPQSIATAI
RIGNPASWKQALHAQHACNGYFGSIDDSGILEAQKLLARTCGLFVEPASAISVAGLLASKPPEGSSVVCTLTGHGLKDQQ
LAFRKSDGTEYSLPSLPGDSQSIASYLNLA
>Mature_350_residues
MYFRGIINEYRSRLGLDADLKVVTLGEGNTPLVYSEALSSLTASSVWLKFDGANPTGSFKDRGMTVAVSKAVNSGVRTVI
CASTGNTSASAAAYSAAAGIECVVLIPEGFVSHGKLCQAVAHGARVLQIRGNFDSCLRVARELAEIHPVHLVNSINPDRI
SGQKTAAFEIIDALGDAPDYHYLPVGNAGNYTAYYLGYSEEKVRGNSTHIPRIFGFQASGAAPIVSGHIVENPQSIATAI
RIGNPASWKQALHAQHACNGYFGSIDDSGILEAQKLLARTCGLFVEPASAISVAGLLASKPPEGSSVVCTLTGHGLKDQQ
LAFRKSDGTEYSLPSLPGDSQSIASYLNLA

Specific function: Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine [H]

COG id: COG0498

COG function: function code E; Threonine synthase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the threonine synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001926
- InterPro:   IPR000634
- InterPro:   IPR004450 [H]

Pfam domain/function: PF00291 PALP [H]

EC number: =4.2.3.1 [H]

Molecular weight: Translated: 36815; Mature: 36815

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: PS00165 DEHYDRATASE_SER_THR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYFRGIINEYRSRLGLDADLKVVTLGEGNTPLVYSEALSSLTASSVWLKFDGANPTGSFK
CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEHHHHHHHHHHCEEEEEEECCCCCCCCC
DRGMTVAVSKAVNSGVRTVICASTGNTSASAAAYSAAAGIECVVLIPEGFVSHGKLCQAV
CCCEEEEEEHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH
AHGARVLQIRGNFDSCLRVARELAEIHPVHLVNSINPDRISGQKTAAFEIIDALGDAPDY
HCCEEEEEEECCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCC
HYLPVGNAGNYTAYYLGYSEEKVRGNSTHIPRIFGFQASGAAPIVSGHIVENPQSIATAI
EEEECCCCCCEEEEEEECCHHHCCCCCCCCCEEEEECCCCCCCEEECEEECCCHHHHHEE
RIGNPASWKQALHAQHACNGYFGSIDDSGILEAQKLLARTCGLFVEPASAISVAGLLASK
ECCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCEECCHHHHHHHHHHHCC
PPEGSSVVCTLTGHGLKDQQLAFRKSDGTEYSLPSLPGDSQSIASYLNLA
CCCCCEEEEEEECCCCCCCHHEEECCCCCEEECCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MYFRGIINEYRSRLGLDADLKVVTLGEGNTPLVYSEALSSLTASSVWLKFDGANPTGSFK
CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEHHHHHHHHHHCEEEEEEECCCCCCCCC
DRGMTVAVSKAVNSGVRTVICASTGNTSASAAAYSAAAGIECVVLIPEGFVSHGKLCQAV
CCCEEEEEEHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH
AHGARVLQIRGNFDSCLRVARELAEIHPVHLVNSINPDRISGQKTAAFEIIDALGDAPDY
HCCEEEEEEECCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCC
HYLPVGNAGNYTAYYLGYSEEKVRGNSTHIPRIFGFQASGAAPIVSGHIVENPQSIATAI
EEEECCCCCCEEEEEEECCHHHCCCCCCCCCEEEEECCCCCCCEEECEEECCCHHHHHEE
RIGNPASWKQALHAQHACNGYFGSIDDSGILEAQKLLARTCGLFVEPASAISVAGLLASK
ECCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCEECCHHHHHHHHHHHCC
PPEGSSVVCTLTGHGLKDQQLAFRKSDGTEYSLPSLPGDSQSIASYLNLA
CCCCCEEEEEEECCCCCCCHHEEECCCCCEEECCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA