| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
Click here to switch to the map view.
The map label for this gene is thrC [H]
Identifier: 28572484
GI number: 28572484
Start: 361919
End: 362971
Strand: Direct
Name: thrC [H]
Synonym: TW330
Alternate gene names: 28572484
Gene position: 361919-362971 (Clockwise)
Preceding gene: 28572483
Following gene: 28572485
Centisome position: 39.09
GC content: 48.15
Gene sequence:
>1053_bases ATGTATTTTAGAGGGATTATCAACGAGTACAGATCACGCCTGGGGCTTGACGCGGACCTTAAGGTTGTTACCCTTGGTGA GGGTAATACCCCCCTTGTGTATTCAGAAGCTCTGTCGAGCCTAACTGCCTCTTCTGTGTGGTTAAAGTTTGATGGCGCTA ACCCAACTGGGTCGTTCAAAGATAGAGGTATGACAGTTGCCGTATCAAAAGCTGTGAATTCGGGCGTGCGCACGGTTATT TGCGCATCAACAGGTAACACTTCTGCTTCAGCCGCAGCTTATTCCGCCGCTGCAGGTATAGAGTGCGTTGTTCTCATCCC CGAGGGCTTCGTAAGTCATGGTAAGTTGTGCCAGGCTGTCGCACACGGCGCGAGAGTTTTGCAGATTAGAGGAAATTTTG ATTCATGCCTCAGAGTGGCTAGGGAGCTCGCAGAAATTCACCCCGTACACCTTGTAAACTCAATAAATCCAGACCGTATA AGCGGACAAAAAACTGCTGCGTTTGAGATAATTGATGCCCTGGGGGATGCGCCAGATTACCATTATCTTCCTGTTGGTAA TGCTGGTAATTACACGGCATACTATCTTGGATACAGTGAAGAGAAAGTTCGTGGAAACAGTACCCATATTCCGCGTATTT TCGGCTTTCAGGCAAGTGGTGCTGCTCCGATTGTCTCAGGGCATATTGTTGAAAATCCGCAGTCAATAGCAACTGCTATT CGTATTGGCAATCCGGCTTCTTGGAAACAGGCTCTGCATGCCCAACACGCGTGTAATGGTTATTTTGGGAGTATAGATGA TTCAGGCATCCTCGAGGCACAGAAATTATTGGCACGCACTTGTGGGTTATTTGTTGAACCGGCCAGTGCGATAAGCGTTG CAGGCCTTCTTGCCTCAAAACCCCCAGAGGGCAGTAGTGTTGTGTGCACTCTAACTGGCCATGGATTGAAGGATCAACAG CTGGCCTTTCGTAAATCTGATGGCACAGAGTATTCCCTTCCGTCATTACCCGGTGATTCGCAATCAATAGCTTCATATTT GAATCTCGCGTGA
Upstream 100 bases:
>100_bases AAATTGCTCGCATGTTGTGAGTATAGTAAGTGTTATGCGGATTGAACAGGGCGGTTTTGAAGAAACTGGCCTTGCGTTAC CGGAAACGGCGTGATGCACG
Downstream 100 bases:
>100_bases TGCCGCCTGATGCATCTGTTGCGCAAAATCACGGGAAGCAGTGAGATTGGAGGGTTGTAGGAATTTGAGTTTCACAGTTA AAGTCCCCGCGACAAGTGCA
Product: threonine synthase
Products: NA
Alternate protein names: TS [H]
Number of amino acids: Translated: 350; Mature: 350
Protein sequence:
>350_residues MYFRGIINEYRSRLGLDADLKVVTLGEGNTPLVYSEALSSLTASSVWLKFDGANPTGSFKDRGMTVAVSKAVNSGVRTVI CASTGNTSASAAAYSAAAGIECVVLIPEGFVSHGKLCQAVAHGARVLQIRGNFDSCLRVARELAEIHPVHLVNSINPDRI SGQKTAAFEIIDALGDAPDYHYLPVGNAGNYTAYYLGYSEEKVRGNSTHIPRIFGFQASGAAPIVSGHIVENPQSIATAI RIGNPASWKQALHAQHACNGYFGSIDDSGILEAQKLLARTCGLFVEPASAISVAGLLASKPPEGSSVVCTLTGHGLKDQQ LAFRKSDGTEYSLPSLPGDSQSIASYLNLA
Sequences:
>Translated_350_residues MYFRGIINEYRSRLGLDADLKVVTLGEGNTPLVYSEALSSLTASSVWLKFDGANPTGSFKDRGMTVAVSKAVNSGVRTVI CASTGNTSASAAAYSAAAGIECVVLIPEGFVSHGKLCQAVAHGARVLQIRGNFDSCLRVARELAEIHPVHLVNSINPDRI SGQKTAAFEIIDALGDAPDYHYLPVGNAGNYTAYYLGYSEEKVRGNSTHIPRIFGFQASGAAPIVSGHIVENPQSIATAI RIGNPASWKQALHAQHACNGYFGSIDDSGILEAQKLLARTCGLFVEPASAISVAGLLASKPPEGSSVVCTLTGHGLKDQQ LAFRKSDGTEYSLPSLPGDSQSIASYLNLA >Mature_350_residues MYFRGIINEYRSRLGLDADLKVVTLGEGNTPLVYSEALSSLTASSVWLKFDGANPTGSFKDRGMTVAVSKAVNSGVRTVI CASTGNTSASAAAYSAAAGIECVVLIPEGFVSHGKLCQAVAHGARVLQIRGNFDSCLRVARELAEIHPVHLVNSINPDRI SGQKTAAFEIIDALGDAPDYHYLPVGNAGNYTAYYLGYSEEKVRGNSTHIPRIFGFQASGAAPIVSGHIVENPQSIATAI RIGNPASWKQALHAQHACNGYFGSIDDSGILEAQKLLARTCGLFVEPASAISVAGLLASKPPEGSSVVCTLTGHGLKDQQ LAFRKSDGTEYSLPSLPGDSQSIASYLNLA
Specific function: Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine [H]
COG id: COG0498
COG function: function code E; Threonine synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the threonine synthase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001926 - InterPro: IPR000634 - InterPro: IPR004450 [H]
Pfam domain/function: PF00291 PALP [H]
EC number: =4.2.3.1 [H]
Molecular weight: Translated: 36815; Mature: 36815
Theoretical pI: Translated: 7.04; Mature: 7.04
Prosite motif: PS00165 DEHYDRATASE_SER_THR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYFRGIINEYRSRLGLDADLKVVTLGEGNTPLVYSEALSSLTASSVWLKFDGANPTGSFK CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEHHHHHHHHHHCEEEEEEECCCCCCCCC DRGMTVAVSKAVNSGVRTVICASTGNTSASAAAYSAAAGIECVVLIPEGFVSHGKLCQAV CCCEEEEEEHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH AHGARVLQIRGNFDSCLRVARELAEIHPVHLVNSINPDRISGQKTAAFEIIDALGDAPDY HCCEEEEEEECCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCC HYLPVGNAGNYTAYYLGYSEEKVRGNSTHIPRIFGFQASGAAPIVSGHIVENPQSIATAI EEEECCCCCCEEEEEEECCHHHCCCCCCCCCEEEEECCCCCCCEEECEEECCCHHHHHEE RIGNPASWKQALHAQHACNGYFGSIDDSGILEAQKLLARTCGLFVEPASAISVAGLLASK ECCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCEECCHHHHHHHHHHHCC PPEGSSVVCTLTGHGLKDQQLAFRKSDGTEYSLPSLPGDSQSIASYLNLA CCCCCEEEEEEECCCCCCCHHEEECCCCCEEECCCCCCCHHHHHHHHCCC >Mature Secondary Structure MYFRGIINEYRSRLGLDADLKVVTLGEGNTPLVYSEALSSLTASSVWLKFDGANPTGSFK CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEHHHHHHHHHHCEEEEEEECCCCCCCCC DRGMTVAVSKAVNSGVRTVICASTGNTSASAAAYSAAAGIECVVLIPEGFVSHGKLCQAV CCCEEEEEEHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH AHGARVLQIRGNFDSCLRVARELAEIHPVHLVNSINPDRISGQKTAAFEIIDALGDAPDY HCCEEEEEEECCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCC HYLPVGNAGNYTAYYLGYSEEKVRGNSTHIPRIFGFQASGAAPIVSGHIVENPQSIATAI EEEECCCCCCEEEEEEECCHHHCCCCCCCCCEEEEECCCCCCCEEECEEECCCHHHHHEE RIGNPASWKQALHAQHACNGYFGSIDDSGILEAQKLLARTCGLFVEPASAISVAGLLASK ECCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCEECCHHHHHHHHHHHCC PPEGSSVVCTLTGHGLKDQQLAFRKSDGTEYSLPSLPGDSQSIASYLNLA CCCCCEEEEEEECCCCCCCHHEEECCCCCEEECCCCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA