Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is 28572480

Identifier: 28572480

GI number: 28572480

Start: 356911

End: 357549

Strand: Reverse

Name: 28572480

Synonym: TW325

Alternate gene names: NA

Gene position: 357549-356911 (Counterclockwise)

Preceding gene: 28572482

Following gene: 28572472

Centisome position: 38.61

GC content: 51.64

Gene sequence:

>639_bases
GTGATGCGGTCGATCAGGTACAAGTCACTCGCGTGGCGCCTTCCGCGCAGAGAGCTTCGTAAAAAGGAAGCTCTTCGAAA
GCGCCGGGGTTGGCCTGTCAGGGTCGCGGTTGCCACATTTACGATGACCCTTTTGTCTGGCACCCCAAGTGGAGCGTACG
CTTTTGATGATGTTTATCGCTCCGCCTGGCAAGGTTTTGAAAACCTGCAGGACCTGAAAAAAGAGGGTCAAACACTTGCT
CTCGGGGGTTATTTCGTCTCACCGCATGCTCAGGACTCCAGGGCGTACACCTCAAGGCCACTTGGTTCTTTTAGCGTACT
TTACAAGCCCGTCGCGACCAGCGAAATACAATCATGGGCCCTTGAAAGGGTTTATGCCTCTGGATGGGACTATAGGCAGT
TTACATGCCTTGTTCTACTGTGGAACAAGGAATCTGGCTGGAACCCATACGCAATGAACAGATATTCTGGGGCGTATGGG
ATACCCCAAGCCCTCCCAGGTAACAAAATGAAAGTTGCTGGAGATGATTGGCGAACAAACCCAAAGACCCAAGTATCATG
GGGTTTGAGGTACATATCTGCAAGGTTTGGCAACCCGTGTGGGGCATGGGAACATTCTGTGCGAAAGGGTTGGTACTAA

Upstream 100 bases:

>100_bases
GTTTTGATAAGAATAAAGTCGGTGTTTTGGGAAGTATCTCAGGGGGTTCAGACTTAGAATCAGTCGCAAAGTTAAATGCA
AGAAGAGCTGTATAATCTTT

Downstream 100 bases:

>100_bases
TCTCACCGGGAGTACAGAAGTGCTGTGCGCGAGATTTGGATTTATTCGTAATCCTAAGTAATAAACACAATTTTTAAGAC
AGTCGGTCGATGCGGTGCTA

Product: secreted protein

Products: NA

Alternate protein names: G5 Domain Protein; G5 Domain-Containing Protein; TraG-Related Protein; Membrane-Bound Transglycosylase; Transglycosylase; Phage Tail Tape Measure Protein; Immunogenic Secreted Protein; Transglycosylase Domain Protein; Peptidase S1 And S6 Chymotrypsin/Hap; TraG-Like Protein; Phage Tail Tape Mesure Protein

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MMRSIRYKSLAWRLPRRELRKKEALRKRRGWPVRVAVATFTMTLLSGTPSGAYAFDDVYRSAWQGFENLQDLKKEGQTLA
LGGYFVSPHAQDSRAYTSRPLGSFSVLYKPVATSEIQSWALERVYASGWDYRQFTCLVLLWNKESGWNPYAMNRYSGAYG
IPQALPGNKMKVAGDDWRTNPKTQVSWGLRYISARFGNPCGAWEHSVRKGWY

Sequences:

>Translated_212_residues
MMRSIRYKSLAWRLPRRELRKKEALRKRRGWPVRVAVATFTMTLLSGTPSGAYAFDDVYRSAWQGFENLQDLKKEGQTLA
LGGYFVSPHAQDSRAYTSRPLGSFSVLYKPVATSEIQSWALERVYASGWDYRQFTCLVLLWNKESGWNPYAMNRYSGAYG
IPQALPGNKMKVAGDDWRTNPKTQVSWGLRYISARFGNPCGAWEHSVRKGWY
>Mature_212_residues
MMRSIRYKSLAWRLPRRELRKKEALRKRRGWPVRVAVATFTMTLLSGTPSGAYAFDDVYRSAWQGFENLQDLKKEGQTLA
LGGYFVSPHAQDSRAYTSRPLGSFSVLYKPVATSEIQSWALERVYASGWDYRQFTCLVLLWNKESGWNPYAMNRYSGAYG
IPQALPGNKMKVAGDDWRTNPKTQVSWGLRYISARFGNPCGAWEHSVRKGWY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24382; Mature: 24382

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRSIRYKSLAWRLPRRELRKKEALRKRRGWPVRVAVATFTMTLLSGTPSGAYAFDDVYR
CCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCHHHHHHHH
SAWQGFENLQDLKKEGQTLALGGYFVSPHAQDSRAYTSRPLGSFSVLYKPVATSEIQSWA
HHHHHHHHHHHHHHCCCEEEECCEEECCCCCCCCHHHCCCCCCHHHHCCCHHHHHHHHHH
LERVYASGWDYRQFTCLVLLWNKESGWNPYAMNRYSGAYGIPQALPGNKMKVAGDDWRTN
HHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
PKTQVSWGLRYISARFGNPCGAWEHSVRKGWY
CCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCC
>Mature Secondary Structure
MMRSIRYKSLAWRLPRRELRKKEALRKRRGWPVRVAVATFTMTLLSGTPSGAYAFDDVYR
CCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCHHHHHHHH
SAWQGFENLQDLKKEGQTLALGGYFVSPHAQDSRAYTSRPLGSFSVLYKPVATSEIQSWA
HHHHHHHHHHHHHHCCCEEEECCEEECCCCCCCCHHHCCCCCCHHHHCCCHHHHHHHHHH
LERVYASGWDYRQFTCLVLLWNKESGWNPYAMNRYSGAYGIPQALPGNKMKVAGDDWRTN
HHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
PKTQVSWGLRYISARFGNPCGAWEHSVRKGWY
CCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA