| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is dut
Identifier: 28572433
GI number: 28572433
Start: 312051
End: 312491
Strand: Direct
Name: dut
Synonym: TW277
Alternate gene names: 28572433
Gene position: 312051-312491 (Clockwise)
Preceding gene: 28572431
Following gene: 28572434
Centisome position: 33.7
GC content: 49.89
Gene sequence:
>441_bases GTGACTGTTGAGGTGTTGTTCAAGGGTGGCTACACGCCGCAGCGCGCTTTTGATGGTGATGCCGGTTTTGATCTTCAGTC AAGCCACACAGCGGTTATACAACCGCGCTGTCGACAGGTTGTAAAAACAGGTATTGCGATCGCGTTGCCGGATGGCTATG CCGGTTTTATCATGCCACGCAGCGGGTTAGCTTCTGAGAATGGTATTACACTGGTCAATTCACCGGGCGTGATTGACGCT GGGTATCGTGGTGAAATATCGGTTGTGCTGATCAATACGGATTTGCACCAGGCTTTTCATATTTCACAGGGTGACCGAAT TGCTCAGTTGGTTATTATGCCGGTTTGTCATGCAAGTTTTATAGAGGTCGATACTCTTCCTGGGAGTGCAAGGGGCATCT CTGCTTTTGGTTCAAGCGGAAGGCACGATACACGTGGATGA
Upstream 100 bases:
>100_bases AAAGCCTTTCTGTATAACGCATAATCATACGAGGTTTATGAACAAGACCGAGAAATATTTTATTTGATATTTATCTGACT CTTGTGCTAGGTCTATTAGA
Downstream 100 bases:
>100_bases CAGGTCAAAAACAGGTCCTTTTGACGAATCCGAGGTAGATTCCGTTAGAATCTTCGTTGATCTCGGCGGAATTAAGGTAC CTCCGTGCGAACGCTTGTCT
Product: deoxyuridine 5'-triphosphate nucleotidohydrolase
Products: NA
Alternate protein names: dUTPase; dUTP pyrophosphatase
Number of amino acids: Translated: 146; Mature: 145
Protein sequence:
>146_residues MTVEVLFKGGYTPQRAFDGDAGFDLQSSHTAVIQPRCRQVVKTGIAIALPDGYAGFIMPRSGLASENGITLVNSPGVIDA GYRGEISVVLINTDLHQAFHISQGDRIAQLVIMPVCHASFIEVDTLPGSARGISAFGSSGRHDTRG
Sequences:
>Translated_146_residues MTVEVLFKGGYTPQRAFDGDAGFDLQSSHTAVIQPRCRQVVKTGIAIALPDGYAGFIMPRSGLASENGITLVNSPGVIDA GYRGEISVVLINTDLHQAFHISQGDRIAQLVIMPVCHASFIEVDTLPGSARGISAFGSSGRHDTRG >Mature_145_residues TVEVLFKGGYTPQRAFDGDAGFDLQSSHTAVIQPRCRQVVKTGIAIALPDGYAGFIMPRSGLASENGITLVNSPGVIDAG YRGEISVVLINTDLHQAFHISQGDRIAQLVIMPVCHASFIEVDTLPGSARGISAFGSSGRHDTRG
Specific function: This enzyme is involved in nucleotide metabolism:it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA
COG id: COG0756
COG function: function code F; dUTPase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dUTPase family
Homologues:
Organism=Homo sapiens, GI70906444, Length=130, Percent_Identity=42.3076923076923, Blast_Score=94, Evalue=4e-20, Organism=Homo sapiens, GI4503423, Length=130, Percent_Identity=42.3076923076923, Blast_Score=94, Evalue=6e-20, Organism=Homo sapiens, GI70906441, Length=130, Percent_Identity=42.3076923076923, Blast_Score=92, Evalue=2e-19, Organism=Escherichia coli, GI1790071, Length=133, Percent_Identity=36.8421052631579, Blast_Score=81, Evalue=3e-17, Organism=Caenorhabditis elegans, GI71988561, Length=121, Percent_Identity=42.1487603305785, Blast_Score=93, Evalue=4e-20, Organism=Saccharomyces cerevisiae, GI6319729, Length=129, Percent_Identity=40.3100775193798, Blast_Score=84, Evalue=8e-18, Organism=Drosophila melanogaster, GI24583610, Length=139, Percent_Identity=37.410071942446, Blast_Score=91, Evalue=3e-19, Organism=Drosophila melanogaster, GI19921126, Length=139, Percent_Identity=37.410071942446, Blast_Score=91, Evalue=3e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): DUT_TROW8 (Q83I22)
Other databases:
- EMBL: BX251410 - RefSeq: NP_789213.1 - ProteinModelPortal: Q83I22 - SMR: Q83I22 - STRING: Q83I22 - GeneID: 1064566 - GenomeReviews: BX072543_GR - KEGG: tws:TW277 - eggNOG: COG0756 - HOGENOM: HBG436079 - OMA: GTIDEGY - PhylomeDB: Q83I22 - ProtClustDB: CLSK229619 - BioCyc: TWHI218496:TW0258-MONOMER - HAMAP: MF_00116 - InterPro: IPR008180 - InterPro: IPR008181 - TIGRFAMs: TIGR00576
Pfam domain/function: PF00692 dUTPase
EC number: =3.6.1.23
Molecular weight: Translated: 15441; Mature: 15310
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: NA
Important sites: BINDING 73-73
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVEVLFKGGYTPQRAFDGDAGFDLQSSHTAVIQPRCRQVVKTGIAIALPDGYAGFIMPR CEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHCCEEEEECCCCEEEEEEC SGLASENGITLVNSPGVIDAGYRGEISVVLINTDLHQAFHISQGDRIAQLVIMPVCHASF CCCCCCCCEEEEECCCEEECCCCCEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCE IEVDTLPGSARGISAFGSSGRHDTRG EEEECCCCCCCCEECCCCCCCCCCCC >Mature Secondary Structure TVEVLFKGGYTPQRAFDGDAGFDLQSSHTAVIQPRCRQVVKTGIAIALPDGYAGFIMPR EEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHCCEEEEECCCCEEEEEEC SGLASENGITLVNSPGVIDAGYRGEISVVLINTDLHQAFHISQGDRIAQLVIMPVCHASF CCCCCCCCEEEEECCCEEECCCCCEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCE IEVDTLPGSARGISAFGSSGRHDTRG EEEECCCCCCCCEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12606174