| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is ppnK
Identifier: 28572278
GI number: 28572278
Start: 116812
End: 117729
Strand: Reverse
Name: ppnK
Synonym: TW112
Alternate gene names: 28572278
Gene position: 117729-116812 (Counterclockwise)
Preceding gene: 28572279
Following gene: 28572277
Centisome position: 12.71
GC content: 44.66
Gene sequence:
>918_bases ATGAGAGTGTATATTGCGCACAATGGTTGTCTTGAAGCTGAGCCTATTTATGGGACTATCTGCGAGCTCGTGGCGCAGAG AAAAATGTCGGTCATTACAGATCCCCATGCTCGTAATAATGAAAGCGCTCGTAATACTGACAGTGGAGTAGTTTCTCTCA ATCAAGCCGGGCGCAATAAATATCTGGATCAAGAAACAACATCGCCTGCAACATCACGGTCTATTAATGTGCCGTTTTGT GCCGGAATATCCATTGGTGGAGATGGCACCTTTCTGCGAATGGCGAGAGACTTGAAAAACACAGGAACCCCGTTATTCGG AGTAAATATGGGGCGAATGGGATTTCTGGTCGATATCGAACCAGAAGATATAGTGAATCTCGTTGAAAATATCGTAAAAG GTGAATATACAGAAGAAAAACGACTACCGATAACAGCAAGCGTTCAAAGAGGGGGTAAAAAGATCCACGACGAGTGGGCG GTAAACGAAATTACAATTGAAAGAAAGGTTGAAGGAAAAGTTGTTGATATAGAGGTATTTGTTGACGGATGCAGGGTGAT GGACATTAGCTGTAATGGCATTATTATTGCAACCGCAACAGGCTCAACTGCTTATTCGTTTTCTTCGGGTGGACCAATTG TTTGGCCAGAGATGAAGGTGACTCTGGTTGTTCCGGTTAGCCCGCATGAGCTGTTTGCTAAACCAATCGTGTTGCCAGAT AATCGATCAATTCTGCTCAAGGTTACATCTAGAGATAATAAAGTAGTGCTGTGCAGTGACGGGCAAGTGAGATTATGCCT GCAATCCGGCGATGAAATTGCGTGCCACGTGGGAAAGGTGCCTGTTGTGTTTGGCCGTGTGAAAAAGGGGTGTTTTGCAG AGCATCTCGTAAAGAAATTTAACCTCCAGACCGCTTGA
Upstream 100 bases:
>100_bases TCTGATCCCGTGGATAAAAACCCTACCCCTGTGTCCTGCTGACTCTGGTAACTCTGATAAATCCTCCAAATAACCACACT TGGTAAGAGACAGTGTGTAA
Downstream 100 bases:
>100_bases GGGTCGGCGCTGTGCAGAATGATTGAACAAATCTCTATACGCAATTTTGGAAATATAGCAAAAGCAGATATAGATTTTGG TTCCGATTTTACCGTGATAA
Product: ATP-NAD kinase
Products: NA
Alternate protein names: Poly(P)/ATP NAD kinase
Number of amino acids: Translated: 305; Mature: 305
Protein sequence:
>305_residues MRVYIAHNGCLEAEPIYGTICELVAQRKMSVITDPHARNNESARNTDSGVVSLNQAGRNKYLDQETTSPATSRSINVPFC AGISIGGDGTFLRMARDLKNTGTPLFGVNMGRMGFLVDIEPEDIVNLVENIVKGEYTEEKRLPITASVQRGGKKIHDEWA VNEITIERKVEGKVVDIEVFVDGCRVMDISCNGIIIATATGSTAYSFSSGGPIVWPEMKVTLVVPVSPHELFAKPIVLPD NRSILLKVTSRDNKVVLCSDGQVRLCLQSGDEIACHVGKVPVVFGRVKKGCFAEHLVKKFNLQTA
Sequences:
>Translated_305_residues MRVYIAHNGCLEAEPIYGTICELVAQRKMSVITDPHARNNESARNTDSGVVSLNQAGRNKYLDQETTSPATSRSINVPFC AGISIGGDGTFLRMARDLKNTGTPLFGVNMGRMGFLVDIEPEDIVNLVENIVKGEYTEEKRLPITASVQRGGKKIHDEWA VNEITIERKVEGKVVDIEVFVDGCRVMDISCNGIIIATATGSTAYSFSSGGPIVWPEMKVTLVVPVSPHELFAKPIVLPD NRSILLKVTSRDNKVVLCSDGQVRLCLQSGDEIACHVGKVPVVFGRVKKGCFAEHLVKKFNLQTA >Mature_305_residues MRVYIAHNGCLEAEPIYGTICELVAQRKMSVITDPHARNNESARNTDSGVVSLNQAGRNKYLDQETTSPATSRSINVPFC AGISIGGDGTFLRMARDLKNTGTPLFGVNMGRMGFLVDIEPEDIVNLVENIVKGEYTEEKRLPITASVQRGGKKIHDEWA VNEITIERKVEGKVVDIEVFVDGCRVMDISCNGIIIATATGSTAYSFSSGGPIVWPEMKVTLVVPVSPHELFAKPIVLPD NRSILLKVTSRDNKVVLCSDGQVRLCLQSGDEIACHVGKVPVVFGRVKKGCFAEHLVKKFNLQTA
Specific function: Catalyzes the phosphorylation of NAD to NADP. Utilizes ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus
COG id: COG0061
COG function: function code G; Predicted sugar kinase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the NAD kinase family
Homologues:
Organism=Homo sapiens, GI55743112, Length=229, Percent_Identity=26.2008733624454, Blast_Score=70, Evalue=2e-12, Organism=Escherichia coli, GI1788968, Length=192, Percent_Identity=32.8125, Blast_Score=132, Evalue=3e-32, Organism=Saccharomyces cerevisiae, GI6322509, Length=217, Percent_Identity=29.9539170506912, Blast_Score=99, Evalue=1e-21, Organism=Saccharomyces cerevisiae, GI6320794, Length=240, Percent_Identity=27.5, Blast_Score=94, Evalue=2e-20, Organism=Saccharomyces cerevisiae, GI6325068, Length=200, Percent_Identity=29.5, Blast_Score=91, Evalue=3e-19, Organism=Drosophila melanogaster, GI28573830, Length=219, Percent_Identity=24.2009132420091, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI28573828, Length=219, Percent_Identity=24.2009132420091, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI28573832, Length=219, Percent_Identity=24.2009132420091, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI161077047, Length=219, Percent_Identity=24.2009132420091, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI28573826, Length=219, Percent_Identity=24.2009132420091, Blast_Score=69, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): PPNK_TROW8 (Q83IC3)
Other databases:
- EMBL: BX251410 - RefSeq: NP_789058.1 - ProteinModelPortal: Q83IC3 - SMR: Q83IC3 - STRING: Q83IC3 - GeneID: 1064410 - GenomeReviews: BX072543_GR - KEGG: tws:TW112 - eggNOG: COG0061 - HOGENOM: HBG251158 - OMA: CVPEGFD - PhylomeDB: Q83IC3 - ProtClustDB: CLSK229483 - BioCyc: TWHI218496:TW0103-MONOMER - GO: GO:0005737 - HAMAP: MF_00361 - InterPro: IPR016064 - InterPro: IPR017438 - InterPro: IPR017437 - InterPro: IPR002504 - Gene3D: G3DSA:2.60.200.30 - Gene3D: G3DSA:3.40.50.10330 - PANTHER: PTHR20275
Pfam domain/function: PF01513 NAD_kinase; SSF111331 ATP-NAD_kinase_PpnK-typ
EC number: =2.7.1.23
Molecular weight: Translated: 33274; Mature: 33274
Theoretical pI: Translated: 7.38; Mature: 7.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVYIAHNGCLEAEPIYGTICELVAQRKMSVITDPHARNNESARNTDSGVVSLNQAGRNK CEEEEEECCCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEEEECCCCCCC YLDQETTSPATSRSINVPFCAGISIGGDGTFLRMARDLKNTGTPLFGVNMGRMGFLVDIE CCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEC PEDIVNLVENIVKGEYTEEKRLPITASVQRGGKKIHDEWAVNEITIERKVEGKVVDIEVF HHHHHHHHHHHHCCCCCCCCCCCEEEEHHCCCCCCCCCCCEEEEEEEEECCCEEEEEEEE VDGCRVMDISCNGIIIATATGSTAYSFSSGGPIVWPEMKVTLVVPVSPHELFAKPIVLPD ECCEEEEEEECCEEEEEEECCCCEEEECCCCCEEECCEEEEEEEECCHHHHHHCCEEECC NRSILLKVTSRDNKVVLCSDGQVRLCLQSGDEIACHVGKVPVVFGRVKKGCFAEHLVKKF CCEEEEEEECCCCEEEEECCCCEEEEEECCCEEEEEECCCCEEEEHHHCCHHHHHHHHHH NLQTA CCCCC >Mature Secondary Structure MRVYIAHNGCLEAEPIYGTICELVAQRKMSVITDPHARNNESARNTDSGVVSLNQAGRNK CEEEEEECCCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEEEECCCCCCC YLDQETTSPATSRSINVPFCAGISIGGDGTFLRMARDLKNTGTPLFGVNMGRMGFLVDIE CCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEC PEDIVNLVENIVKGEYTEEKRLPITASVQRGGKKIHDEWAVNEITIERKVEGKVVDIEVF HHHHHHHHHHHHCCCCCCCCCCCEEEEHHCCCCCCCCCCCEEEEEEEEECCCEEEEEEEE VDGCRVMDISCNGIIIATATGSTAYSFSSGGPIVWPEMKVTLVVPVSPHELFAKPIVLPD ECCEEEEEEECCEEEEEEECCCCEEEECCCCCEEECCEEEEEEEECCHHHHHHCCEEECC NRSILLKVTSRDNKVVLCSDGQVRLCLQSGDEIACHVGKVPVVFGRVKKGCFAEHLVKKF CCEEEEEEECCCCEEEEECCCCEEEEEECCCEEEEEECCCCEEEEHHHCCHHHHHHHHHH NLQTA CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12606174