Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is 28572273

Identifier: 28572273

GI number: 28572273

Start: 105068

End: 105424

Strand: Direct

Name: 28572273

Synonym: TW107

Alternate gene names: NA

Gene position: 105068-105424 (Clockwise)

Preceding gene: 28572272

Following gene: 28572285

Centisome position: 11.35

GC content: 36.13

Gene sequence:

>357_bases
GTGACTCAGGCATTTAGCAGAAGGTCACCGTTTCGCAAAATAAAACTTGTCACGGCAATACTCTCATCCAGTTTTGCTCT
ATCAATGATTACCGTTTTTGTTTCTTTTATGTACCTCGTTGCAATTACTGACCCGTCTAGCGGTGTTGAGCAATATCACT
CACTTATTTTTAACACCATCTATATTCGTACCGAACCCAGCAGTAAAGGTGTTCATATCGATATATCTGTTGGCCTTCTT
GCGGTTATCCTGCCATTCCTATTCTTCACGATCATAATCTCTCTGTGTGTATTTTTTTACAAGAAGTTTATAAAAAACAA
AAAGACAACTAAATCAAAAAAATTACCTTTGAAATAA

Upstream 100 bases:

>100_bases
AGGCCAAACAAATTGCCAGCTTTGCCACACCGTCACACGAACACCTGGAGGATCGCGTGGCAGAAATACTGGGAGTAGAT
CTGCATGATAGGGGAGCGCT

Downstream 100 bases:

>100_bases
CACTGTTCAGGATTTCTGTTAAGCCTTGTGGAAACATGACCAGGGGTCAGGCAATTCTTGTTGCATTGTCAGGTCCCGGG
ATCTGTTTCTTATGTGGTGT

Product: integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 117

Protein sequence:

>118_residues
MTQAFSRRSPFRKIKLVTAILSSSFALSMITVFVSFMYLVAITDPSSGVEQYHSLIFNTIYIRTEPSSKGVHIDISVGLL
AVILPFLFFTIIISLCVFFYKKFIKNKKTTKSKKLPLK

Sequences:

>Translated_118_residues
MTQAFSRRSPFRKIKLVTAILSSSFALSMITVFVSFMYLVAITDPSSGVEQYHSLIFNTIYIRTEPSSKGVHIDISVGLL
AVILPFLFFTIIISLCVFFYKKFIKNKKTTKSKKLPLK
>Mature_117_residues
TQAFSRRSPFRKIKLVTAILSSSFALSMITVFVSFMYLVAITDPSSGVEQYHSLIFNTIYIRTEPSSKGVHIDISVGLLA
VILPFLFFTIIISLCVFFYKKFIKNKKTTKSKKLPLK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13406; Mature: 13275

Theoretical pI: Translated: 10.87; Mature: 10.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQAFSRRSPFRKIKLVTAILSSSFALSMITVFVSFMYLVAITDPSSGVEQYHSLIFNTI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
YIRTEPSSKGVHIDISVGLLAVILPFLFFTIIISLCVFFYKKFIKNKKTTKSKKLPLK
EEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
TQAFSRRSPFRKIKLVTAILSSSFALSMITVFVSFMYLVAITDPSSGVEQYHSLIFNTI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
YIRTEPSSKGVHIDISVGLLAVILPFLFFTIIISLCVFFYKKFIKNKKTTKSKKLPLK
EEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA