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The map label for this gene is ybjD [C]

Identifier: 28572268

GI number: 28572268

Start: 100840

End: 102411

Strand: Reverse

Name: ybjD [C]

Synonym: TW101

Alternate gene names: 28572268

Gene position: 102411-100840 (Counterclockwise)

Preceding gene: 28572274

Following gene: 28572266

Centisome position: 11.06

GC content: 45.42

Gene sequence:

>1572_bases
ATGCAGCTAAAACAAGTTACTATAACGAATTACACTCCGATATCTGACATAACACTTGAGGTGCGACGGCACCTCGTTCT
GGTTGGTGCCAACGACTCGGGCAAGACATCAATTCTGACCTGCCTTGATCTGCTGCTGAGTGCCACAACACCAATGCTAT
ACAGTCACTTCCAGGCGTGGCATTTTCGAGATGCAACAAAACCAATAATTATCAGCGTTGACATCAACAATCTTGATGAC
AAAATCCAAATTGCGTTTGGCATAAACAACAACCGGATATCAGAGATAAAGCTCACACTGAGCGCGTTTCTTGATGAGAG
TCAAATGCTAACAATAAAGCGAGAGGTGCTTTATAACAACACAACAAAGCCTGTTGCCGACAGCCAACTTACCGGCATTG
GTTGGGAGTTATTCGATGCGGGTGAAGTGCCATGTACAGCGAGTCAATATAAAACAGTTCTTAGTGGCGTTATGGAATCA
ACGAATCTTAGGCAGCACGGTCTTTCATCTCTAACTCAGTCGTTTCGTGAGCAAATCGAGGCATCACCGTTTTTGGAAAA
TCTGCGCGAAAGACTTGCAGAAAAACTGATAAAAACCATGCCTGGCAATCTAAATAAAGATGCAGTCCATCTTGTACCAA
AAGACGATATAGGCACACAGGTACTTGGCAATATCAGGGTTCAGGTAAAACGACAAAACAAGTCACCTCATATGATCGAT
TGTTTGGACGGAATGCGATCGCTTTATGCAGTGGCCATTTATGATGTCCTCAGTAGAGATGCGAGTGTTGTTGGTATTGA
CGAGCCAGAGACACATCTGCATCCGACGATTCAGAGAAGCCTGGCGCGGGTTTTGCAAGAGGAATCTAATCAAAAAATTA
TTGCAACCCACTCGGCTGATATTGTTGGAGCCTTTTCGCCAGAGCACGTTGCGGTTGTTCAGCCCAATGGGCAGGTTGTC
CAGCCAGCACGGGGCTTTCTCGGAGAAGATGAGCGCATTATTGCAAGGTGGTGGGTTCACGGGCGACTGGAGCCCCTAAC
CGCTAGGCGGATTGTTGCTGTCGAGGGGATTTCGGACCGAATAATCCTTGAGAGTGCAGCTGAAGTAACTGGGCGAAATC
TTGACCGACTTGGTATTGCTTTGATAGAAGCAAATGGCTCTGGGGATATGTGGCCGATCTATAAACTATTCGGACCAAAA
GGTTTTAGGATCCCTATTTCCTTGCTGATTGATTCTGACGCTGTTCAGCACACTTCAGTACGACTGGGAATTCCAAAAAA
TGAGTTTACTCAAAACTCAATATATGTTTCGAAGCGTGATTTGGAGGACGAGTATACAAGGGCCATTGGTGCAAATACTT
TATGGAATGCACTAAGAGAGTCAAAACTCTTTGCTCATTCCGAGCTGCGCGGGGGTGGAAAAACCGAACAGGCAGTTGCT
GCGTTTTGTCGTAAAAACTCAAGTAATAAAGTCAGGGCAGCTCTTGTTGTCTCATCTCTCTTAAATGAACAGCTTGCAAT
AGCGATTGAAAGTGTAAATAGCCTCCTGAATGCGATCGAACTACCAAGGTAG

Upstream 100 bases:

>100_bases
GATTACATGGCACTTCTAATTACATGGCACGACAATGCGTGCGGTGTTTAGCGTGACATTTAGATCGGGCAAGCGCGACG
TGCCGCAGGGGGGTAAGTTA

Downstream 100 bases:

>100_bases
GCATCTAACGAAATGGGATATATTACTTATCGTGAACATCAAGAAGGATAATCGTAATATTGTCCCTTCCCCCAGCAGAG
AGTGCTGCATATAAAAGACT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 523; Mature: 523

Protein sequence:

>523_residues
MQLKQVTITNYTPISDITLEVRRHLVLVGANDSGKTSILTCLDLLLSATTPMLYSHFQAWHFRDATKPIIISVDINNLDD
KIQIAFGINNNRISEIKLTLSAFLDESQMLTIKREVLYNNTTKPVADSQLTGIGWELFDAGEVPCTASQYKTVLSGVMES
TNLRQHGLSSLTQSFREQIEASPFLENLRERLAEKLIKTMPGNLNKDAVHLVPKDDIGTQVLGNIRVQVKRQNKSPHMID
CLDGMRSLYAVAIYDVLSRDASVVGIDEPETHLHPTIQRSLARVLQEESNQKIIATHSADIVGAFSPEHVAVVQPNGQVV
QPARGFLGEDERIIARWWVHGRLEPLTARRIVAVEGISDRIILESAAEVTGRNLDRLGIALIEANGSGDMWPIYKLFGPK
GFRIPISLLIDSDAVQHTSVRLGIPKNEFTQNSIYVSKRDLEDEYTRAIGANTLWNALRESKLFAHSELRGGGKTEQAVA
AFCRKNSSNKVRAALVVSSLLNEQLAIAIESVNSLLNAIELPR

Sequences:

>Translated_523_residues
MQLKQVTITNYTPISDITLEVRRHLVLVGANDSGKTSILTCLDLLLSATTPMLYSHFQAWHFRDATKPIIISVDINNLDD
KIQIAFGINNNRISEIKLTLSAFLDESQMLTIKREVLYNNTTKPVADSQLTGIGWELFDAGEVPCTASQYKTVLSGVMES
TNLRQHGLSSLTQSFREQIEASPFLENLRERLAEKLIKTMPGNLNKDAVHLVPKDDIGTQVLGNIRVQVKRQNKSPHMID
CLDGMRSLYAVAIYDVLSRDASVVGIDEPETHLHPTIQRSLARVLQEESNQKIIATHSADIVGAFSPEHVAVVQPNGQVV
QPARGFLGEDERIIARWWVHGRLEPLTARRIVAVEGISDRIILESAAEVTGRNLDRLGIALIEANGSGDMWPIYKLFGPK
GFRIPISLLIDSDAVQHTSVRLGIPKNEFTQNSIYVSKRDLEDEYTRAIGANTLWNALRESKLFAHSELRGGGKTEQAVA
AFCRKNSSNKVRAALVVSSLLNEQLAIAIESVNSLLNAIELPR
>Mature_523_residues
MQLKQVTITNYTPISDITLEVRRHLVLVGANDSGKTSILTCLDLLLSATTPMLYSHFQAWHFRDATKPIIISVDINNLDD
KIQIAFGINNNRISEIKLTLSAFLDESQMLTIKREVLYNNTTKPVADSQLTGIGWELFDAGEVPCTASQYKTVLSGVMES
TNLRQHGLSSLTQSFREQIEASPFLENLRERLAEKLIKTMPGNLNKDAVHLVPKDDIGTQVLGNIRVQVKRQNKSPHMID
CLDGMRSLYAVAIYDVLSRDASVVGIDEPETHLHPTIQRSLARVLQEESNQKIIATHSADIVGAFSPEHVAVVQPNGQVV
QPARGFLGEDERIIARWWVHGRLEPLTARRIVAVEGISDRIILESAAEVTGRNLDRLGIALIEANGSGDMWPIYKLFGPK
GFRIPISLLIDSDAVQHTSVRLGIPKNEFTQNSIYVSKRDLEDEYTRAIGANTLWNALRESKLFAHSELRGGGKTEQAVA
AFCRKNSSNKVRAALVVSSLLNEQLAIAIESVNSLLNAIELPR

Specific function: Unknown

COG id: COG3593

COG function: function code L; Predicted ATP-dependent endonuclease of the OLD family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58003; Mature: 58003

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLKQVTITNYTPISDITLEVRRHLVLVGANDSGKTSILTCLDLLLSATTPMLYSHFQAW
CCCEEEEECCCCCCHHHHHEEECEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
HFRDATKPIIISVDINNLDDKIQIAFGINNNRISEIKLTLSAFLDESQMLTIKREVLYNN
HCCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEHHEEEHHHHCCCCHHHEEEHHHHHCC
TTKPVADSQLTGIGWELFDAGEVPCTASQYKTVLSGVMESTNLRQHGLSSLTQSFREQIE
CCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
ASPFLENLRERLAEKLIKTMPGNLNKDAVHLVPKDDIGTQVLGNIRVQVKRQNKSPHMID
CCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHCCEEEEEEECCCCCCHHH
CLDGMRSLYAVAIYDVLSRDASVVGIDEPETHLHPTIQRSLARVLQEESNQKIIATHSAD
HHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHCCHHHHHHHHHHHHHCCCCEEEEEECCC
IVGAFSPEHVAVVQPNGQVVQPARGFLGEDERIIARWWVHGRLEPLTARRIVAVEGISDR
EEECCCCCEEEEECCCCCEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCE
IILESAAEVTGRNLDRLGIALIEANGSGDMWPIYKLFGPKGFRIPISLLIDSDAVQHTSV
EEHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEHHHCCCCCCEEEEEEEECCCCCEECEE
RLGIPKNEFTQNSIYVSKRDLEDEYTRAIGANTLWNALRESKLFAHSELRGGGKTEQAVA
EECCCCCCCCCCCEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
AFCRKNSSNKVRAALVVSSLLNEQLAIAIESVNSLLNAIELPR
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQLKQVTITNYTPISDITLEVRRHLVLVGANDSGKTSILTCLDLLLSATTPMLYSHFQAW
CCCEEEEECCCCCCHHHHHEEECEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
HFRDATKPIIISVDINNLDDKIQIAFGINNNRISEIKLTLSAFLDESQMLTIKREVLYNN
HCCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEHHEEEHHHHCCCCHHHEEEHHHHHCC
TTKPVADSQLTGIGWELFDAGEVPCTASQYKTVLSGVMESTNLRQHGLSSLTQSFREQIE
CCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
ASPFLENLRERLAEKLIKTMPGNLNKDAVHLVPKDDIGTQVLGNIRVQVKRQNKSPHMID
CCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHCCEEEEEEECCCCCCHHH
CLDGMRSLYAVAIYDVLSRDASVVGIDEPETHLHPTIQRSLARVLQEESNQKIIATHSAD
HHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHCCHHHHHHHHHHHHHCCCCEEEEEECCC
IVGAFSPEHVAVVQPNGQVVQPARGFLGEDERIIARWWVHGRLEPLTARRIVAVEGISDR
EEECCCCCEEEEECCCCCEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCE
IILESAAEVTGRNLDRLGIALIEANGSGDMWPIYKLFGPKGFRIPISLLIDSDAVQHTSV
EEHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEHHHCCCCCCEEEEEEEECCCCCEECEE
RLGIPKNEFTQNSIYVSKRDLEDEYTRAIGANTLWNALRESKLFAHSELRGGGKTEQAVA
EECCCCCCCCCCCEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
AFCRKNSSNKVRAALVVSSLLNEQLAIAIESVNSLLNAIELPR
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA