Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is stp [H]

Identifier: 28572267

GI number: 28572267

Start: 100065

End: 100817

Strand: Direct

Name: stp [H]

Synonym: TW100

Alternate gene names: 28572267

Gene position: 100065-100817 (Clockwise)

Preceding gene: 28572265

Following gene: 28572269

Centisome position: 10.81

GC content: 45.42

Gene sequence:

>753_bases
GTGTCTAATAGATCAACTGGTTCAGATGATTACATCGTCTCTGGCAAGTTCTCTATATCGTGGGCCTCACTTAGCCATGT
TGGCCACCACCGAGAGTCTAATGAAGACAGCTACAGTGCAAAGCCCCCGTTATGGGTTGTTGCCGATGGCATGGGTGGTC
ATGCTTGTGGTGATATTGCCAGCGGAGTTGTTACATCTTTTCTGTCTGCTATATCTTCAGACTTTGTAAGTCCGCAGGAT
ATTACTGGGGCTTTGCGACAAGCACTTGCAAGTCTTGCCAAAAAAATTGGCTCTACCACTGCGGGAACAACCCTATCGGG
AATTGGACTCTCAAAAGTGGATAACCAACCAGCCTGGCTTGTTCTAAATCTCGGCGATAGCCGTGTTTATTGTATTGAAT
CTGACAAGATACGTTTACTAACTGAAGATCATTCGATTGTTCACGAGATGATCAAAAGCGGCCAAATAACACCAGAAGAA
GCTGCTATTCATCCTTATAACAACATCATAACCCGGGCAGTTAGTTTCAACAGCGAACCCATTCCAGATTTTAGCTTTCT
TCCGCTTCGCAGCGGCGTACGGTTTATTATTTGTTCTGATGGACTTACCAAAGAATTGAATGATGCGCAGATCGAGACGC
ATGCTACCCGTGGATCTCCTCGCGAGGCTGCTGAGAGTCTTTTATATGCAGCACTCTCTGCTGGGGGAAGGGACAATATT
ACGATTATCCTTCTTGATGTTCACGATAAGTAA

Upstream 100 bases:

>100_bases
CTTGTGTTCCTATAGATCCGGTTGAGCCAACAATTATTACCCTCTGCACACTTGAAACTCTAGTACAATTTTCGTATCCG
CATAAGACTTGTTAAGGGCT

Downstream 100 bases:

>100_bases
TATATCCCATTTCGTTAGATGCCTACCTTGGTAGTTCGATCGCATTCAGGAGGCTATTTACACTTTCAATCGCTATTGCA
AGCTGTTCATTTAAGAGAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSNRSTGSDDYIVSGKFSISWASLSHVGHHRESNEDSYSAKPPLWVVADGMGGHACGDIASGVVTSFLSAISSDFVSPQD
ITGALRQALASLAKKIGSTTAGTTLSGIGLSKVDNQPAWLVLNLGDSRVYCIESDKIRLLTEDHSIVHEMIKSGQITPEE
AAIHPYNNIITRAVSFNSEPIPDFSFLPLRSGVRFIICSDGLTKELNDAQIETHATRGSPREAAESLLYAALSAGGRDNI
TIILLDVHDK

Sequences:

>Translated_250_residues
MSNRSTGSDDYIVSGKFSISWASLSHVGHHRESNEDSYSAKPPLWVVADGMGGHACGDIASGVVTSFLSAISSDFVSPQD
ITGALRQALASLAKKIGSTTAGTTLSGIGLSKVDNQPAWLVLNLGDSRVYCIESDKIRLLTEDHSIVHEMIKSGQITPEE
AAIHPYNNIITRAVSFNSEPIPDFSFLPLRSGVRFIICSDGLTKELNDAQIETHATRGSPREAAESLLYAALSAGGRDNI
TIILLDVHDK
>Mature_249_residues
SNRSTGSDDYIVSGKFSISWASLSHVGHHRESNEDSYSAKPPLWVVADGMGGHACGDIASGVVTSFLSAISSDFVSPQDI
TGALRQALASLAKKIGSTTAGTTLSGIGLSKVDNQPAWLVLNLGDSRVYCIESDKIRLLTEDHSIVHEMIKSGQITPEEA
AIHPYNNIITRAVSFNSEPIPDFSFLPLRSGVRFIICSDGLTKELNDAQIETHATRGSPREAAESLLYAALSAGGRDNIT
IILLDVHDK

Specific function: Protein phosphatase that dephosphorylates EF-Tu [H]

COG id: COG0631

COG function: function code T; Serine/threonine protein phosphatase

Gene ontology:

Cell location: Cytoplasm. Membrane; Peripheral membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PP2C-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015655
- InterPro:   IPR001932
- InterPro:   IPR014045 [H]

Pfam domain/function: PF00481 PP2C [H]

EC number: =3.1.3.16 [H]

Molecular weight: Translated: 26737; Mature: 26606

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNRSTGSDDYIVSGKFSISWASLSHVGHHRESNEDSYSAKPPLWVVADGMGGHACGDIA
CCCCCCCCCCEEEECEEEEEHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHH
SGVVTSFLSAISSDFVSPQDITGALRQALASLAKKIGSTTAGTTLSGIGLSKVDNQPAWL
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCEE
VLNLGDSRVYCIESDKIRLLTEDHSIVHEMIKSGQITPEEAAIHPYNNIITRAVSFNSEP
EEEECCCEEEEEECCCEEEEECCHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHCCCCCC
IPDFSFLPLRSGVRFIICSDGLTKELNDAQIETHATRGSPREAAESLLYAALSAGGRDNI
CCCCEEEECCCCCEEEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCE
TIILLDVHDK
EEEEEEECCC
>Mature Secondary Structure 
SNRSTGSDDYIVSGKFSISWASLSHVGHHRESNEDSYSAKPPLWVVADGMGGHACGDIA
CCCCCCCCCEEEECEEEEEHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHH
SGVVTSFLSAISSDFVSPQDITGALRQALASLAKKIGSTTAGTTLSGIGLSKVDNQPAWL
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCEE
VLNLGDSRVYCIESDKIRLLTEDHSIVHEMIKSGQITPEEAAIHPYNNIITRAVSFNSEP
EEEECCCEEEEEECCCEEEEECCHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHCCCCCC
IPDFSFLPLRSGVRFIICSDGLTKELNDAQIETHATRGSPREAAESLLYAALSAGGRDNI
CCCCEEEECCCCCEEEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCE
TIILLDVHDK
EEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]