| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is purH [H]
Identifier: 28572261
GI number: 28572261
Start: 93477
End: 95105
Strand: Direct
Name: purH [H]
Synonym: TW094
Alternate gene names: 28572261
Gene position: 93477-95105 (Clockwise)
Preceding gene: 28572260
Following gene: 28572263
Centisome position: 10.1
GC content: 47.08
Gene sequence:
>1629_bases ATGACGACAAATATACGTATAAAAAGAGCTCTTATTTCAGTGAGTGATAAGTCAGGCCTTGCAGATCTAGCAGAAGCCCT CGCGGCGCATTCTGTCAAAATAGTGTCAACCGGCAGCACGGCAGAGTTCATACGCGGGGTGTCTATTCCCGTGCGCGATG TATCTGAGGTAACAGGGGTTGGGGAACTCTTGGATGGCCGCGTGAAAACCCTGCATCCCAAAATACATGCCCCGATTCTT GCTGACACAACTTCACAGATGCACCGCGCGCAGCTACAGCAGCTTGGCGTTGATGCTTTTGATCTTGTCGTGGTCAACCT GTATCCATTTTTTGAAATTTCCAAAAACTCTGAAGCAGAATTCTCTGATGTAATTGAGCAAATTGACATTGGTGGCTCTG CCCTAATAAGGGCTGCGGCAAAAAATCATACACGAGTTGTTGTTATTGTTGATCCAAGTGACTACATTCATGTGATTAAC AGCCTTGAAAGGGGTGCCCCGTCCCGCCTGCGCCACCAACTCGCTATAAAGGCGTATTCACACACTTCCGAATATGATCT TCATATTTCCAGATGGCTTTCCGAGCGGTTTTACAAACATACTCTTTATTCTTCGAGTGATTCTGTAGGTGATGTTTGTG ATAACAATCTCGATTCCAATGATCATTTTGTTGAACTGCGTGGCAAAAAACTGGGTGATCTGCGCTACGGCGAAAACAGT CATCAGAAGGCTTCCCTATACCTGTCTTGCAAGGAGAGCGTTCCCCAATTGGGCTTGGCGAGTGCAGCTCTTCTTGGGGG CAAGCAGATGTCGTACAACAATTATCTTGACGCAGATGTTGCCTCAAGAATTGTCAACAGCTTTGATCTGCCAACAGTAT CGTTTGTAAAGCACGGTAACCCTTGTGGAATTGCCTCAAATATTGAGGTTGCTATTGCATGCAGAAATGCTCATGAGTGT GACCCAACTTCAGCCTTTGGCGGTGTTGTCGCTGTCAATAGGGAAGTTACCCTTGACGTTGCAACTCATCTTTTGCCGAT TTTTATAGAGGTAGTTGTGGCGCCCGGTTATGACCCACAAGCACTACAGCTTTTGCTAAAAAAGAAGAATCTGAGGGTTG TAGAGCTTCCTGAGTGCGCTTCGTATCCGCAAGATCAGTTGCGGCAAATCTCCGGTGGATTTCTGGTGCAGGACGCAGAC AAATTTGACCATCACGACACATTTTCCAGCTGGACTCAGGTGTCTGGCCCACGTATTTTTATGGATGCCGGAGCTGATAA CGAGACGCTAATGGATTTGGAATTTGCCTGGAAATCCTGTGCGTTTGTTAAATCCAATGCGATTCTTCTGGCAAAAAACA TGGCATCGGTTGGAATAGGAATGGGGCAGGTAAATAGACTAGATGCGTGTTACCTGGCTGTAAATCGTGCGGGATCCAGA TCCCTGGGTGCAGTCGCCGCATCTGATGCATTTTTTCCCTTTTCTGATGGCCTGGATGTGCTAATAAATTCCGGAGTAAA GGCTATTGTGCAGCCGGGCGGGTCTGTTCGTGATAATGCTGTTATAGCTGCTGCTCAACAGGCGGGTGTCACCATGTTTT TTACCGGCAAGAGGCATTTTGCGCATTGA
Upstream 100 bases:
>100_bases TCTAAAGAATCTTTTGCATAACAGCGTGAGGCGTCCCTCTGGTAAAACAGGAGATCGATGAACGGGTCGGTAAATTTTAG TGATAAGTAATGTTTAGAAT
Downstream 100 bases:
>100_bases ATGTTTTGCCCCACAGTGTTTCTCTGGACCATTTCTGAAGACAAAAACATGCAACGTGCCCCTTATTTAGTAGCTTAATC AAGCAAGACAAGCACAAAAC
Product: bifunctional purine biosynthesis protein PurH
Products: NA
Alternate protein names: Phosphoribosylaminoimidazolecarboxamide formyltransferase; AICAR transformylase; IMP cyclohydrolase; ATIC; IMP synthase; Inosinicase [H]
Number of amino acids: Translated: 542; Mature: 541
Protein sequence:
>542_residues MTTNIRIKRALISVSDKSGLADLAEALAAHSVKIVSTGSTAEFIRGVSIPVRDVSEVTGVGELLDGRVKTLHPKIHAPIL ADTTSQMHRAQLQQLGVDAFDLVVVNLYPFFEISKNSEAEFSDVIEQIDIGGSALIRAAAKNHTRVVVIVDPSDYIHVIN SLERGAPSRLRHQLAIKAYSHTSEYDLHISRWLSERFYKHTLYSSSDSVGDVCDNNLDSNDHFVELRGKKLGDLRYGENS HQKASLYLSCKESVPQLGLASAALLGGKQMSYNNYLDADVASRIVNSFDLPTVSFVKHGNPCGIASNIEVAIACRNAHEC DPTSAFGGVVAVNREVTLDVATHLLPIFIEVVVAPGYDPQALQLLLKKKNLRVVELPECASYPQDQLRQISGGFLVQDAD KFDHHDTFSSWTQVSGPRIFMDAGADNETLMDLEFAWKSCAFVKSNAILLAKNMASVGIGMGQVNRLDACYLAVNRAGSR SLGAVAASDAFFPFSDGLDVLINSGVKAIVQPGGSVRDNAVIAAAQQAGVTMFFTGKRHFAH
Sequences:
>Translated_542_residues MTTNIRIKRALISVSDKSGLADLAEALAAHSVKIVSTGSTAEFIRGVSIPVRDVSEVTGVGELLDGRVKTLHPKIHAPIL ADTTSQMHRAQLQQLGVDAFDLVVVNLYPFFEISKNSEAEFSDVIEQIDIGGSALIRAAAKNHTRVVVIVDPSDYIHVIN SLERGAPSRLRHQLAIKAYSHTSEYDLHISRWLSERFYKHTLYSSSDSVGDVCDNNLDSNDHFVELRGKKLGDLRYGENS HQKASLYLSCKESVPQLGLASAALLGGKQMSYNNYLDADVASRIVNSFDLPTVSFVKHGNPCGIASNIEVAIACRNAHEC DPTSAFGGVVAVNREVTLDVATHLLPIFIEVVVAPGYDPQALQLLLKKKNLRVVELPECASYPQDQLRQISGGFLVQDAD KFDHHDTFSSWTQVSGPRIFMDAGADNETLMDLEFAWKSCAFVKSNAILLAKNMASVGIGMGQVNRLDACYLAVNRAGSR SLGAVAASDAFFPFSDGLDVLINSGVKAIVQPGGSVRDNAVIAAAQQAGVTMFFTGKRHFAH >Mature_541_residues TTNIRIKRALISVSDKSGLADLAEALAAHSVKIVSTGSTAEFIRGVSIPVRDVSEVTGVGELLDGRVKTLHPKIHAPILA DTTSQMHRAQLQQLGVDAFDLVVVNLYPFFEISKNSEAEFSDVIEQIDIGGSALIRAAAKNHTRVVVIVDPSDYIHVINS LERGAPSRLRHQLAIKAYSHTSEYDLHISRWLSERFYKHTLYSSSDSVGDVCDNNLDSNDHFVELRGKKLGDLRYGENSH QKASLYLSCKESVPQLGLASAALLGGKQMSYNNYLDADVASRIVNSFDLPTVSFVKHGNPCGIASNIEVAIACRNAHECD PTSAFGGVVAVNREVTLDVATHLLPIFIEVVVAPGYDPQALQLLLKKKNLRVVELPECASYPQDQLRQISGGFLVQDADK FDHHDTFSSWTQVSGPRIFMDAGADNETLMDLEFAWKSCAFVKSNAILLAKNMASVGIGMGQVNRLDACYLAVNRAGSRS LGAVAASDAFFPFSDGLDVLINSGVKAIVQPGGSVRDNAVIAAAQQAGVTMFFTGKRHFAH
Specific function: De novo purine biosynthesis; ninth step. De novo purine biosynthesis; tenth step. [C]
COG id: COG0138
COG function: function code F; AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the purH family [H]
Homologues:
Organism=Homo sapiens, GI20127454, Length=503, Percent_Identity=30.8151093439364, Blast_Score=200, Evalue=2e-51, Organism=Escherichia coli, GI1790439, Length=544, Percent_Identity=39.5220588235294, Blast_Score=379, Evalue=1e-106, Organism=Caenorhabditis elegans, GI71985564, Length=504, Percent_Identity=31.9444444444444, Blast_Score=198, Evalue=5e-51, Organism=Saccharomyces cerevisiae, GI6323056, Length=498, Percent_Identity=32.5301204819277, Blast_Score=217, Evalue=4e-57, Organism=Saccharomyces cerevisiae, GI6323768, Length=499, Percent_Identity=32.2645290581162, Blast_Score=213, Evalue=4e-56, Organism=Drosophila melanogaster, GI24649832, Length=504, Percent_Identity=32.3412698412698, Blast_Score=201, Evalue=1e-51,
Paralogues:
None
Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 640 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002695 - InterPro: IPR013982 - InterPro: IPR016193 - InterPro: IPR011607 [H]
Pfam domain/function: PF01808 AICARFT_IMPCHas; PF02142 MGS [H]
EC number: =2.1.2.3; =3.5.4.10 [H]
Molecular weight: Translated: 58722; Mature: 58591
Theoretical pI: Translated: 6.55; Mature: 6.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTNIRIKRALISVSDKSGLADLAEALAAHSVKIVSTGSTAEFIRGVSIPVRDVSEVTGV CCCCEEEEEEEEEECCCCCHHHHHHHHHHCCEEEEECCCHHHHHCCCCCCHHHHHHHHCH GELLDGRVKTLHPKIHAPILADTTSQMHRAQLQQLGVDAFDLVVVNLYPFFEISKNSEAE HHHHCCCCEEECCCCCCCEEECCHHHHHHHHHHHCCCCHHHEEEEEEEEEEEECCCCCCH FSDVIEQIDIGGSALIRAAAKNHTRVVVIVDPSDYIHVINSLERGAPSRLRHQLAIKAYS HHHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHEEEEC HTSEYDLHISRWLSERFYKHTLYSSSDSVGDVCDNNLDSNDHFVELRGKKLGDLRYGENS CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCEEEECCCCCCCCCCCCCC HQKASLYLSCKESVPQLGLASAALLGGKQMSYNNYLDADVASRIVNSFDLPTVSFVKHGN CCEEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEHHCCCC PCGIASNIEVAIACRNAHECDPTSAFGGVVAVNREVTLDVATHLLPIFIEVVVAPGYDPQ CCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCEEEHHHHHHHHHHHHHHEECCCCCHH ALQLLLKKKNLRVVELPECASYPQDQLRQISGGFLVQDADKFDHHDTFSSWTQVSGPRIF HHHHHHHHCCCEEEECCHHHCCCHHHHHHHCCCEEEECCCCCCCCCCHHHHHHCCCCEEE MDAGADNETLMDLEFAWKSCAFVKSNAILLAKNMASVGIGMGQVNRLDACYLAVNRAGSR EECCCCCCEEEEHHHHHHHHHEEECCEEEEEECHHHHCCCCCCCCHHCEEEEEEECCCCC SLGAVAASDAFFPFSDGLDVLINSGVKAIVQPGGSVRDNAVIAAAQQAGVTMFFTGKRHF CCCCEEECCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCEEEEEHHHCCEEEEEECCHHC AH CC >Mature Secondary Structure TTNIRIKRALISVSDKSGLADLAEALAAHSVKIVSTGSTAEFIRGVSIPVRDVSEVTGV CCCEEEEEEEEEECCCCCHHHHHHHHHHCCEEEEECCCHHHHHCCCCCCHHHHHHHHCH GELLDGRVKTLHPKIHAPILADTTSQMHRAQLQQLGVDAFDLVVVNLYPFFEISKNSEAE HHHHCCCCEEECCCCCCCEEECCHHHHHHHHHHHCCCCHHHEEEEEEEEEEEECCCCCCH FSDVIEQIDIGGSALIRAAAKNHTRVVVIVDPSDYIHVINSLERGAPSRLRHQLAIKAYS HHHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHEEEEC HTSEYDLHISRWLSERFYKHTLYSSSDSVGDVCDNNLDSNDHFVELRGKKLGDLRYGENS CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCEEEECCCCCCCCCCCCCC HQKASLYLSCKESVPQLGLASAALLGGKQMSYNNYLDADVASRIVNSFDLPTVSFVKHGN CCEEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEHHCCCC PCGIASNIEVAIACRNAHECDPTSAFGGVVAVNREVTLDVATHLLPIFIEVVVAPGYDPQ CCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCEEEHHHHHHHHHHHHHHEECCCCCHH ALQLLLKKKNLRVVELPECASYPQDQLRQISGGFLVQDADKFDHHDTFSSWTQVSGPRIF HHHHHHHHCCCEEEECCHHHCCCHHHHHHHCCCEEEECCCCCCCCCCHHHHHHCCCCEEE MDAGADNETLMDLEFAWKSCAFVKSNAILLAKNMASVGIGMGQVNRLDACYLAVNRAGSR EECCCCCCEEEEHHHHHHHHHEEECCEEEEEECHHHHCCCCCCCCHHCEEEEEEECCCCC SLGAVAASDAFFPFSDGLDVLINSGVKAIVQPGGSVRDNAVIAAAQQAGVTMFFTGKRHF CCCCEEECCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCEEEEEHHHCCEEEEEECCHHC AH CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA