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The map label for this gene is 28572227

Identifier: 28572227

GI number: 28572227

Start: 47266

End: 47643

Strand: Direct

Name: 28572227

Synonym: TW057

Alternate gene names: NA

Gene position: 47266-47643 (Clockwise)

Preceding gene: 28572224

Following gene: 28572228

Centisome position: 5.1

GC content: 50.53

Gene sequence:

>378_bases
ATGCCTTTGGGGACGGTTCGTTTTTATAACAAAGAACGTGGCTTTGGGTTTGTTGTGTCCGACGATGGCGAGTCTGTTTT
TTTGCCGGCTAAAGCTTTACCGGATGGCGTCTCCGACCTTTCGCCCGGCACCCGTGTTGATTACGGGGCAGCTCTGGGAA
AGAAGGGCTCTCAGGTCTTATCTCTAAGAGTTCTAAGAAAACCACCCCGCCGTGGTGTTAGGTCAACTGATGACATGGCA
GTTATAATCGAGGATCTAATGAAAATTCTTGATGAAGCGGGCGAAAGTTTTAAGCGTGGCCGTTACCCAAAAGCCGAACG
CGCTAAGGTTCTTGCGGCTATGCTCCGCCAGGTTGCAGACGGTCTTGATGCTAACTGA

Upstream 100 bases:

>100_bases
AGTCCTATCTATCCTGACATTTTGTACATACTGAGCATGCGGAAAACTTCAGGATAGGCTCTTTGTAAGAGTAAAATGGT
TACAGGTTTAAGGGGTAAAT

Downstream 100 bases:

>100_bases
CTCGCAAAGAGAGCGCATAAAGGATCTCATAAGTGATTCTTGTGGGTCAGTAGGTGAATTTGTTGAGTGTGTTCCAATAT
CTAATGGCGTTTATGAAATG

Product: cold shock protein B

Products: NA

Alternate protein names: Cold-Shock Domain Family Protein; Cold Shock Protein B; Cold Shock-Like Protein B CspB; Cold Shock Protein B CspB; Cold Shock-Like Protein B; Cold Shock Protein CspB

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MPLGTVRFYNKERGFGFVVSDDGESVFLPAKALPDGVSDLSPGTRVDYGAALGKKGSQVLSLRVLRKPPRRGVRSTDDMA
VIIEDLMKILDEAGESFKRGRYPKAERAKVLAAMLRQVADGLDAN

Sequences:

>Translated_125_residues
MPLGTVRFYNKERGFGFVVSDDGESVFLPAKALPDGVSDLSPGTRVDYGAALGKKGSQVLSLRVLRKPPRRGVRSTDDMA
VIIEDLMKILDEAGESFKRGRYPKAERAKVLAAMLRQVADGLDAN
>Mature_124_residues
PLGTVRFYNKERGFGFVVSDDGESVFLPAKALPDGVSDLSPGTRVDYGAALGKKGSQVLSLRVLRKPPRRGVRSTDDMAV
IIEDLMKILDEAGESFKRGRYPKAERAKVLAAMLRQVADGLDAN

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13596; Mature: 13465

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLGTVRFYNKERGFGFVVSDDGESVFLPAKALPDGVSDLSPGTRVDYGAALGKKGSQVL
CCCCCEEEECCCCCCEEEEECCCCEEEEEHHHCCCCCCCCCCCCCCCHHHHHCCCCHHHH
SLRVLRKPPRRGVRSTDDMAVIIEDLMKILDEAGESFKRGRYPKAERAKVLAAMLRQVAD
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
GLDAN
CCCCC
>Mature Secondary Structure 
PLGTVRFYNKERGFGFVVSDDGESVFLPAKALPDGVSDLSPGTRVDYGAALGKKGSQVL
CCCCEEEECCCCCCEEEEECCCCEEEEEHHHCCCCCCCCCCCCCCCHHHHHCCCCHHHH
SLRVLRKPPRRGVRSTDDMAVIIEDLMKILDEAGESFKRGRYPKAERAKVLAAMLRQVAD
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
GLDAN
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA