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The map label for this gene is ybfF [C]

Identifier: 28572215

GI number: 28572215

Start: 37548

End: 38276

Strand: Reverse

Name: ybfF [C]

Synonym: TW042

Alternate gene names: 28572215

Gene position: 38276-37548 (Counterclockwise)

Preceding gene: 28572225

Following gene: 28572214

Centisome position: 4.13

GC content: 48.42

Gene sequence:

>729_bases
GTGACAAATAGGGTGCTGGTTGTCGTTCCGGCACATAATGAGGCCTTATCCCTCCCTGGGACCTTGCAAGAGATAAAAGA
GAATCTACCGGGATTTAGTGTTTTGGTAATAGACGACGGGTCGACAGATGCAACATCTGATGCAGCGGAGGCGCATTCGA
TAAAAGTAATCAGGATACCGTTCAATGCTGGAGTAGGCGGGGCAATGCGTCTTGGCTTCAGATTTGCCCTCAGAAAAGGA
TTTAACGTTGTTGTTCAGGTTGACGCTGACGGACAGCATAACCCAAAGTACGTTAGTGAACTGATAAATAGACTGAACAA
TAGACATGACAAACCCGATATTGTGATAGGGGCTCGCTTTGCGGGATGCGGAAACTACAAACTAAGAGGGCCAAGACGTT
GGGCGATATTTGCTCTCAGCAAACTTATGAGTCGCTTTGCCAAGACTAATCTAACTGATGTTACAAGCGGTTTTCGCGCA
TCTGGAACAAGAGCAATTAAACTATTTGCCGAGAAATATCCAACCGAATACCTCGGTGATACAGTCGAGTCGGTGGCAAT
TGCCCTTAAAGAAGGTCTTGTGGTGAGACAGGTTCCTGTTGCGATGCGCGAAAGGAAGGCCGGTACTCCATCGCATGGGC
CATGCAGAGCGACCCTGTTGTTGTTGAGAGTAGTTGTGGCAGCGCTTGTGGCACCCCTGAAGTCTGGAAAGTCGAAAGGC
TGTCGATGA

Upstream 100 bases:

>100_bases
CCTACAAAGACGGCCCAATTCTTATAATGTATCTCGTACAGGACAGACCATATATGTATTTAGAATTTACGACATAAAAG
AAGCTTTATAGGATTGAAGA

Downstream 100 bases:

>100_bases
CATCGTACTTTTTTGGCATTTTAGTTTCTATTGCCCTTCTCGTGATTCTAATCGAAATGCTACGAAGAGAAAAACTCCGC
GAAAGACATGCGGTGTGGTG

Product: glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MTNRVLVVVPAHNEALSLPGTLQEIKENLPGFSVLVIDDGSTDATSDAAEAHSIKVIRIPFNAGVGGAMRLGFRFALRKG
FNVVVQVDADGQHNPKYVSELINRLNNRHDKPDIVIGARFAGCGNYKLRGPRRWAIFALSKLMSRFAKTNLTDVTSGFRA
SGTRAIKLFAEKYPTEYLGDTVESVAIALKEGLVVRQVPVAMRERKAGTPSHGPCRATLLLLRVVVAALVAPLKSGKSKG
CR

Sequences:

>Translated_242_residues
MTNRVLVVVPAHNEALSLPGTLQEIKENLPGFSVLVIDDGSTDATSDAAEAHSIKVIRIPFNAGVGGAMRLGFRFALRKG
FNVVVQVDADGQHNPKYVSELINRLNNRHDKPDIVIGARFAGCGNYKLRGPRRWAIFALSKLMSRFAKTNLTDVTSGFRA
SGTRAIKLFAEKYPTEYLGDTVESVAIALKEGLVVRQVPVAMRERKAGTPSHGPCRATLLLLRVVVAALVAPLKSGKSKG
CR
>Mature_241_residues
TNRVLVVVPAHNEALSLPGTLQEIKENLPGFSVLVIDDGSTDATSDAAEAHSIKVIRIPFNAGVGGAMRLGFRFALRKGF
NVVVQVDADGQHNPKYVSELINRLNNRHDKPDIVIGARFAGCGNYKLRGPRRWAIFALSKLMSRFAKTNLTDVTSGFRAS
GTRAIKLFAEKYPTEYLGDTVESVAIALKEGLVVRQVPVAMRERKAGTPSHGPCRATLLLLRVVVAALVAPLKSGKSKGC
R

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI4503363, Length=223, Percent_Identity=25.5605381165919, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 26188; Mature: 26057

Theoretical pI: Translated: 10.78; Mature: 10.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNRVLVVVPAHNEALSLPGTLQEIKENLPGFSVLVIDDGSTDATSDAAEAHSIKVIRIP
CCCCEEEEEECCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCEEEEEEE
FNAGVGGAMRLGFRFALRKGFNVVVQVDADGQHNPKYVSELINRLNNRHDKPDIVIGARF
CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEE
AGCGNYKLRGPRRWAIFALSKLMSRFAKTNLTDVTSGFRASGTRAIKLFAEKYPTEYLGD
CCCCCCEECCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHEEHHHHHCCHHHHHH
TVESVAIALKEGLVVRQVPVAMRERKAGTPSHGPCRATLLLLRVVVAALVAPLKSGKSKG
HHHHHHHHHHCCEEEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
CR
CC
>Mature Secondary Structure 
TNRVLVVVPAHNEALSLPGTLQEIKENLPGFSVLVIDDGSTDATSDAAEAHSIKVIRIP
CCCEEEEEECCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCEEEEEEE
FNAGVGGAMRLGFRFALRKGFNVVVQVDADGQHNPKYVSELINRLNNRHDKPDIVIGARF
CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEE
AGCGNYKLRGPRRWAIFALSKLMSRFAKTNLTDVTSGFRASGTRAIKLFAEKYPTEYLGD
CCCCCCEECCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHEEHHHHHCCHHHHHH
TVESVAIALKEGLVVRQVPVAMRERKAGTPSHGPCRATLLLLRVVVAALVAPLKSGKSKG
HHHHHHHHHHCCEEEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
CR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]