Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is 28572199

Identifier: 28572199

GI number: 28572199

Start: 23661

End: 23798

Strand: Direct

Name: 28572199

Synonym: TW024

Alternate gene names: NA

Gene position: 23661-23798 (Clockwise)

Preceding gene: 28572198

Following gene: 28572201

Centisome position: 2.56

GC content: 44.93

Gene sequence:

>138_bases
ATGGCGTATGAGCTGCATAACCTGTTACATTGCGCTGTGCCATATGACCTTCTTGTGTTTAGCCGTTATATCGCTTTTAC
CGTGGTGGCCGTAAGTCCCATATTCTGGCTTATACCCGGCAATTATGCTTTACTATGA

Upstream 100 bases:

>100_bases
TAACAGTTTTTCGTTCAATGCCTGTCATGGGTAATTTCTCACTACATTTCCAAGCCTTATCCCTTGCCCGCGCAACCGGT
AACCCATCCCTGCGAGACCT

Downstream 100 bases:

>100_bases
TGCCACGGCGACGGTTATGTCTATTCTCACAGGGCTTGCATTCCTCTGTTGTATCTTTTACGGGCCAGTTGCTTCTTGTG
TCGGGAGCAAAAGTACATTT

Product: integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 45; Mature: 44

Protein sequence:

>45_residues
MAYELHNLLHCAVPYDLLVFSRYIAFTVVAVSPIFWLIPGNYALL

Sequences:

>Translated_45_residues
MAYELHNLLHCAVPYDLLVFSRYIAFTVVAVSPIFWLIPGNYALL
>Mature_44_residues
AYELHNLLHCAVPYDLLVFSRYIAFTVVAVSPIFWLIPGNYALL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 5155; Mature: 5024

Theoretical pI: Translated: 6.49; Mature: 6.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYELHNLLHCAVPYDLLVFSRYIAFTVVAVSPIFWLIPGNYALL
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEEEECCCEECC
>Mature Secondary Structure 
AYELHNLLHCAVPYDLLVFSRYIAFTVVAVSPIFWLIPGNYALL
CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEEEECCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA