| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is pgm [C]
Identifier: 28572192
GI number: 28572192
Start: 16396
End: 18048
Strand: Reverse
Name: pgm [C]
Synonym: TW017
Alternate gene names: 28572192
Gene position: 18048-16396 (Counterclockwise)
Preceding gene: 28572193
Following gene: 28572185
Centisome position: 1.95
GC content: 48.76
Gene sequence:
>1653_bases ATGAATATTCTGCGGAAGGCAAGCTTGTGGATTGAGAATGATCCGGTGGCGATCACACGCTTGGAAATGCGCAGACTTCT GGCTGAAAGTGAAAAAACTGGTGACGTGCGTGAGCTCGAAGAGAGGCTGTCTAAGACGCTGGAGTTCGGAACTGCAGGAC TAAGGGCACCGCAGGGTGCTGGATTTAATCGCGTGAATGCCGTCGTGACGGCGCAGGCTGCAAATGCACTGTCTCAATTT CTTTTAGAAGAAAACCGGGGCAGAACGCTGGTTATTGGCTATGACGGAAGATACAATTCACAGCTCTGGGCAAGAAATAC TGCGCGGATTGCTAGCAGTTACGATATAACAGCTCTGATTATGCCAAGGGCTCTACCAACACCCCTTTTGGCATTTGCAG TGCGGCAGCTTGGTGCTGCTGCGGGGGTTATGGTAACCGCCTCCCATAATCCCCGCGAATACAACGGGTACAAAGTGTAT CTCGGAGGAGAAGACAAGGGTGCACAAATACCTGATACTGCAGCGGCAAAAATTGCCAAAAATTTGAGAGATGAAGTCGC GTATAGCGATATACCAATGAAAGATAGTTACGGAATTCTTGATGAGGAGATTATCGAGGCCTACCTGTCCCGTACAGCAA AAGCAATTAAGCGACAGTTTGGCTCACCAAAGGCTGATCTAAAGATATGCCACACAGCTATGCATGGTGTTGGTCACGAG ATCTTTGTACGCCTCATGGAAAAATTGGGTTTCCACAACCTGGTGTTCGTTGAAGAGCAAAAAATGCCAGACCCGGCATT TCCAACCTTGCCGTTTCCAAACCCAGAAGAAAAGGGTGCATTGGATTTAGCATTTGAAACAGCACGGCTTGCAGAGTGTG ACATAATCATTGCTAATGACCCCGATGCCGATCGGGTTGCAGTTGCACATCCGGATGGAAAGGTTTTTACTGGTAATGAA ATAGGCGCCCTACTTGGTGTTGAAATTGCGCGCATGCAACGCGGTCACGGGGTACTGTCAAACAGCATGGTTTCTTCACC GATAATGCGCCGTATAGCTGAGACCTACGGAATGCAACATGTGGAGACGCCAACCGGATTTAAATGGGTTGCGCGTGTGC CAGATATCTGTTTTGGTTTTGAAGAGGCCTTGGGGTACATGATTCATCCAGAGCTTGTAAGGGACAAAGATGGCCTATCG GCCGGCGCCGCCATTGCCACCATAGCTGCCTCTCAAAAGGCCCAAGGTCGAAGCCTCAGAGATTGTCTAGATGACCTGCA AAGCAAGCTTGGGTATTTTAGGAGCACCCAGTATGCCGTTCGCATGGCATCACTTGATAGTGTGCAGGCTGTTATGCAAA ACCTTAGAGCAGAATCGCTGAACAAAATTGGTCGATTTAGAGTAACAAAATATCGTGATCTACTGTTCGGGAGCCCGCCG GTGGATCTGCTTGAGTTTAATCTGGGACAAGATATTGATGATCTGTTTGGGCGACTAATAGTTAGGCCAAGTGGAACGGA ATTAAAACTAAAGTGTTACATAGACAGTGTTGCTAAGACGCCCGATGGCGCCGAGCAGCTTCTGTCGGAGCTAACTTATG CCTGCAAAAACCTCTTATGCGAAACAAGCCGCCGTGGTGGCGCAGAAAACTAG
Upstream 100 bases:
>100_bases TGTAAGCGAACAGGCTAGACAAAAAACTTCAGCATTTCTCGTAGAGCTCATTCGTGACATCGGGCAAGATCTATCGGGCA GGAAATAACAGGGTAGCCAT
Downstream 100 bases:
>100_bases GCCACCAGGCACAGCGTACATGACAGTAGTCCCTGAAACATATTTTTGACAAAACCAAACGGCGGGAATTACTTATACCG CTGGAAAAGATCACTGGGAC
Product: phosphomannomutase
Products: NA
Alternate protein names: PMM [H]
Number of amino acids: Translated: 550; Mature: 550
Protein sequence:
>550_residues MNILRKASLWIENDPVAITRLEMRRLLAESEKTGDVRELEERLSKTLEFGTAGLRAPQGAGFNRVNAVVTAQAANALSQF LLEENRGRTLVIGYDGRYNSQLWARNTARIASSYDITALIMPRALPTPLLAFAVRQLGAAAGVMVTASHNPREYNGYKVY LGGEDKGAQIPDTAAAKIAKNLRDEVAYSDIPMKDSYGILDEEIIEAYLSRTAKAIKRQFGSPKADLKICHTAMHGVGHE IFVRLMEKLGFHNLVFVEEQKMPDPAFPTLPFPNPEEKGALDLAFETARLAECDIIIANDPDADRVAVAHPDGKVFTGNE IGALLGVEIARMQRGHGVLSNSMVSSPIMRRIAETYGMQHVETPTGFKWVARVPDICFGFEEALGYMIHPELVRDKDGLS AGAAIATIAASQKAQGRSLRDCLDDLQSKLGYFRSTQYAVRMASLDSVQAVMQNLRAESLNKIGRFRVTKYRDLLFGSPP VDLLEFNLGQDIDDLFGRLIVRPSGTELKLKCYIDSVAKTPDGAEQLLSELTYACKNLLCETSRRGGAEN
Sequences:
>Translated_550_residues MNILRKASLWIENDPVAITRLEMRRLLAESEKTGDVRELEERLSKTLEFGTAGLRAPQGAGFNRVNAVVTAQAANALSQF LLEENRGRTLVIGYDGRYNSQLWARNTARIASSYDITALIMPRALPTPLLAFAVRQLGAAAGVMVTASHNPREYNGYKVY LGGEDKGAQIPDTAAAKIAKNLRDEVAYSDIPMKDSYGILDEEIIEAYLSRTAKAIKRQFGSPKADLKICHTAMHGVGHE IFVRLMEKLGFHNLVFVEEQKMPDPAFPTLPFPNPEEKGALDLAFETARLAECDIIIANDPDADRVAVAHPDGKVFTGNE IGALLGVEIARMQRGHGVLSNSMVSSPIMRRIAETYGMQHVETPTGFKWVARVPDICFGFEEALGYMIHPELVRDKDGLS AGAAIATIAASQKAQGRSLRDCLDDLQSKLGYFRSTQYAVRMASLDSVQAVMQNLRAESLNKIGRFRVTKYRDLLFGSPP VDLLEFNLGQDIDDLFGRLIVRPSGTELKLKCYIDSVAKTPDGAEQLLSELTYACKNLLCETSRRGGAEN >Mature_550_residues MNILRKASLWIENDPVAITRLEMRRLLAESEKTGDVRELEERLSKTLEFGTAGLRAPQGAGFNRVNAVVTAQAANALSQF LLEENRGRTLVIGYDGRYNSQLWARNTARIASSYDITALIMPRALPTPLLAFAVRQLGAAAGVMVTASHNPREYNGYKVY LGGEDKGAQIPDTAAAKIAKNLRDEVAYSDIPMKDSYGILDEEIIEAYLSRTAKAIKRQFGSPKADLKICHTAMHGVGHE IFVRLMEKLGFHNLVFVEEQKMPDPAFPTLPFPNPEEKGALDLAFETARLAECDIIIANDPDADRVAVAHPDGKVFTGNE IGALLGVEIARMQRGHGVLSNSMVSSPIMRRIAETYGMQHVETPTGFKWVARVPDICFGFEEALGYMIHPELVRDKDGLS AGAAIATIAASQKAQGRSLRDCLDDLQSKLGYFRSTQYAVRMASLDSVQAVMQNLRAESLNKIGRFRVTKYRDLLFGSPP VDLLEFNLGQDIDDLFGRLIVRPSGTELKLKCYIDSVAKTPDGAEQLLSELTYACKNLLCETSRRGGAEN
Specific function: This Enzyme Participates In Both The Breakdown And Synthesis Of Glucose. [C]
COG id: COG1109
COG function: function code G; Phosphomannomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphohexose mutase family [H]
Homologues:
Organism=Homo sapiens, GI63055049, Length=587, Percent_Identity=32.5383304940375, Blast_Score=242, Evalue=8e-64, Organism=Homo sapiens, GI31377548, Length=578, Percent_Identity=32.3529411764706, Blast_Score=233, Evalue=4e-61, Organism=Homo sapiens, GI290463102, Length=551, Percent_Identity=25.5898366606171, Blast_Score=95, Evalue=2e-19, Organism=Homo sapiens, GI21361621, Length=485, Percent_Identity=26.5979381443299, Blast_Score=92, Evalue=2e-18, Organism=Homo sapiens, GI133922562, Length=536, Percent_Identity=25.7462686567164, Blast_Score=81, Evalue=3e-15, Organism=Escherichia coli, GI1786904, Length=512, Percent_Identity=25.1953125, Blast_Score=64, Evalue=3e-11, Organism=Caenorhabditis elegans, GI71993870, Length=591, Percent_Identity=33.8409475465313, Blast_Score=251, Evalue=5e-67, Organism=Caenorhabditis elegans, GI71993878, Length=333, Percent_Identity=34.5345345345345, Blast_Score=172, Evalue=3e-43, Organism=Saccharomyces cerevisiae, GI6323934, Length=607, Percent_Identity=32.7841845140033, Blast_Score=236, Evalue=6e-63, Organism=Drosophila melanogaster, GI20129809, Length=586, Percent_Identity=34.641638225256, Blast_Score=270, Evalue=1e-72, Organism=Drosophila melanogaster, GI24651977, Length=522, Percent_Identity=35.2490421455939, Blast_Score=266, Evalue=4e-71, Organism=Drosophila melanogaster, GI24653722, Length=499, Percent_Identity=31.6633266533066, Blast_Score=204, Evalue=2e-52,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005844 - InterPro: IPR016055 - InterPro: IPR005845 - InterPro: IPR005846 - InterPro: IPR005843 - InterPro: IPR016066 - InterPro: IPR005841 [H]
Pfam domain/function: PF02878 PGM_PMM_I; PF02879 PGM_PMM_II; PF02880 PGM_PMM_III; PF00408 PGM_PMM_IV [H]
EC number: =5.4.2.8 [H]
Molecular weight: Translated: 60556; Mature: 60556
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: PS00710 PGM_PMM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNILRKASLWIENDPVAITRLEMRRLLAESEKTGDVRELEERLSKTLEFGTAGLRAPQGA CCCCCCCCCEECCCCEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC GFNRVNAVVTAQAANALSQFLLEENRGRTLVIGYDGRYNSQLWARNTARIASSYDITALI CCCHHHHEEEHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCCHHHHHCCCCEEEEE MPRALPTPLLAFAVRQLGAAAGVMVTASHNPREYNGYKVYLGGEDKGAQIPDTAAAKIAK ECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH NLRDEVAYSDIPMKDSYGILDEEIIEAYLSRTAKAIKRQFGSPKADLKICHTAMHGVGHE HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHH IFVRLMEKLGFHNLVFVEEQKMPDPAFPTLPFPNPEEKGALDLAFETARLAECDIIIAND HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHCEEEEEEECC PDADRVAVAHPDGKVFTGNEIGALLGVEIARMQRGHGVLSNSMVSSPIMRRIAETYGMQH CCCCCEEEECCCCCEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC VETPTGFKWVARVPDICFGFEEALGYMIHPELVRDKDGLSAGAAIATIAASQKAQGRSLR CCCCCCCHHHHHCCHHHHCHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHH DCLDDLQSKLGYFRSTQYAVRMASLDSVQAVMQNLRAESLNKIGRFRVTKYRDLLFGSPP HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC VDLLEFNLGQDIDDLFGRLIVRPSGTELKLKCYIDSVAKTPDGAEQLLSELTYACKNLLC HHHHHCCCCCCHHHHHHHEEECCCCCCEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHH ETSRRGGAEN HHHCCCCCCC >Mature Secondary Structure MNILRKASLWIENDPVAITRLEMRRLLAESEKTGDVRELEERLSKTLEFGTAGLRAPQGA CCCCCCCCCEECCCCEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC GFNRVNAVVTAQAANALSQFLLEENRGRTLVIGYDGRYNSQLWARNTARIASSYDITALI CCCHHHHEEEHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCCHHHHHCCCCEEEEE MPRALPTPLLAFAVRQLGAAAGVMVTASHNPREYNGYKVYLGGEDKGAQIPDTAAAKIAK ECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH NLRDEVAYSDIPMKDSYGILDEEIIEAYLSRTAKAIKRQFGSPKADLKICHTAMHGVGHE HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHH IFVRLMEKLGFHNLVFVEEQKMPDPAFPTLPFPNPEEKGALDLAFETARLAECDIIIAND HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHCEEEEEEECC PDADRVAVAHPDGKVFTGNEIGALLGVEIARMQRGHGVLSNSMVSSPIMRRIAETYGMQH CCCCCEEEECCCCCEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC VETPTGFKWVARVPDICFGFEEALGYMIHPELVRDKDGLSAGAAIATIAASQKAQGRSLR CCCCCCCHHHHHCCHHHHCHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHH DCLDDLQSKLGYFRSTQYAVRMASLDSVQAVMQNLRAESLNKIGRFRVTKYRDLLFGSPP HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC VDLLEFNLGQDIDDLFGRLIVRPSGTELKLKCYIDSVAKTPDGAEQLLSELTYACKNLLC HHHHHCCCCCCHHHHHHHEEECCCCCCEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHH ETSRRGGAEN HHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]